RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA414225" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA414225 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5522693 5522693 PRJNA414225_P_NODE_35765_length_174_cov_2.464000_g35678_i0 PRJNA414225 35765 174 2.464 4.28736 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 195 2.3e-45   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g35678 i0 91.489 87.051724137931 141 12 81 0 33 173 3251641 3251781 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 15147 195 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
19544690 19544690 PRJNA414225_P_NODE_1616_length_334_cov_1.729825_g1529_i0 PRJNA414225 1616 334 1.729825 5.7776155 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 300 1.02e-76   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g1529 i0 87.597 18.1377245508982 258 32 77 0 43 300 3251523 3251266 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 6058 300 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
20820585 20820585 PRJNA414225_P_NODE_23317_length_184_cov_2.422222_g23230_i0 PRJNA414225 23317 184 2.422222 4.45688848 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 215 1.89e-51   NTclustered gi|2893356067|emb|OZ220490.1| 2053517 g23230 i0 89.881 35.8858695652174 168 15 91 2 2 169 718526 718691 MAG: Bdellovibrionales bacterium isolate a27d8a8e-867a-4b05-bccb-c0e2e07202d2 genome assembly, chromosome: 1 blastn 6603 215 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
22760049 22760049 PRJNA414225_P_NODE_15238_length_192_cov_1.251748_g15151_i0 PRJNA414225 15238 192 1.251748 2.40335616 Bdellovibrio 958 Bacteria Bacteria 182 2.02e-41   NTclustered gi|2800948966|gb|CP168973.1| 959 g15151 i0 94.167 272.427083333333 120 5 69 2 15 133 1676501 1676619 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 52306 183 0.994535519125683 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;