RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA414036" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA414036 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1082932 1082932 PRJNA414036_P_NODE_48221_length_231_cov_2.540816_g46482_i0 PRJNA414036 48221 231 2.540816 5.86928496 Panagrolaimus 55784 Nematoda Nematoda 124 4.31e-24   NTclustered gi|1393507003|gb|MH399794.1| 2211197 g46482 i0 100 55.5151515151515 67 0 60 0 9 75 282 348 Panagrolaimus sp. B3 ARA-2018 small subunit ribosomal RNA gene, partial sequence blastn 12824 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. B3 ARA-2018
6796492 6796492 PRJNA414036_P_NODE_38766_length_236_cov_570.497512_g37027_i0 PRJNA414036 38766 236 570.497512 1346.37412832 Heterodera koreana 501549 Nematoda Nematoda 100 7.45e-17   NTclustered gi|164504681|gb|EU306357.1| 501549 g37027 i0 86.667 3.09322033898305 90 12 38 0 127 216 1443 1354 Heterodera koreana isolate wb17 18S ribosomal RNA gene, partial sequence blastn 730 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera koreana
7460946 7460946 PRJNA414036_P_NODE_80326_length_162_cov_3.307087_g78587_i0 PRJNA414036 80326 162 3.307087 5.35748094 Metazoa 33208 Nematoda Nematoda 161 2.15e-35   NTclustered gi|62082933|gb|AY854224.1| 320137 g78587 i0 100 63.2530864197531 87 0 54 0 7 93 868 782 Daptonema normandicum 18S small subunit ribosomal RNA gene, partial sequence blastn 10247 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Monhysterida Xyalidae Daptonema Daptonema normandicum
10010978 10010978 PRJNA414036_P_NODE_35628_length_248_cov_10.131455_g33892_i0 PRJNA414036 35628 248 10.131455 25.1260084 Nematoda 6231 Nematoda Nematoda 182 2.74e-41   NTclustered gi|482677747|gb|KC522713.1| 55785 g33892 i0 100 42.0846774193548 98 0 40 0 12 109 756 659 Panagrolaimus sp. PS1159 small subunit ribosomal RNA gene, complete sequence blastn 10437 182 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159
13172466 13172466 PRJNA414036_P_NODE_37951_length_239_cov_7.313725_g36212_i0 PRJNA414036 37951 239 7.313725 17.47980275 Panagrolaimus sp. JU1645 1325423 Nematoda Nematoda 366 6.75e-97   NTclustered gi|482677736|gb|KC522702.1| 1325423 g36212 i0 96.818 80.255230125523 220 6 92 1 8 227 310 92 Panagrolaimus sp. JU1645 large subunit ribosomal RNA gene, partial sequence blastn 19181 366 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. JU1645
15110725 15110725 PRJNA414036_P_NODE_63732_length_202_cov_5.970060_g61993_i0 PRJNA414036 63732 202 5.97006 12.0595212 Panagrolaimus 55784 Nematoda Nematoda 171 4.65e-38   NTclustered gi|166014126|gb|EU253569.1| 55785 g61993 i0 98.947 15.8316831683168 95 1 72 0 10 104 1538 1632 Panagrolaimus sp. PS1159 28S large subunit ribosomal RNA gene, partial sequence blastn 3198 171 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. PS1159
18270262 18270262 PRJNA414036_P_NODE_13695_length_394_cov_2.395543_g12046_i0 PRJNA414036 13695 394 2.395543 9.43843942 Panagrolaimus sp. ES6 591446 Nematoda Nematoda 143 2.17e-29   NTclustered gi|221327465|gb|FJ590996.1| 591446 g12046 i0 100 22.2918781725888 77 0 37 0 10 86 152 228 Panagrolaimus sp. ES6 28S ribosomal RNA gene, partial sequence blastn 8783 143 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. ES6
18270375 18270375 PRJNA414036_P_NODE_50415_length_231_cov_2.137755_g48676_i0 PRJNA414036 50415 231 2.137755 4.93821405 Strongyloides papillosus 174720 Nematoda Nematoda 63.9 9.54e-6   NTclustered gi|690021544|emb|LM529246.1| 174720 g48676 i0 100 0.147186147186147 34 0 15 0 10 43 430 463 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0003553 blastn 34 63.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
18270468 18270468 PRJNA414036_P_NODE_89475_length_150_cov_1.400000_g87736_i0 PRJNA414036 89475 150 1.4 2.1 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 2.63e-4   NTclustered gi|687022708|emb|LM525622.1| 174720 g87736 i0 97.059 2.50666666666667 34 1 23 0 87 120 76086 76119 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000031 blastn 376 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
20209113 20209113 PRJNA414036_P_NODE_42696_length_231_cov_4.147959_g40957_i0 PRJNA414036 42696 231 4.147959 9.58178529 Panagrolaimus 55784 Nematoda Nematoda 132 2.58e-26   NTclustered gi|1393507003|gb|MH399794.1| 2211197 g40957 i0 98.649 32.3203463203463 74 1 60 0 10 83 395 322 Panagrolaimus sp. B3 ARA-2018 small subunit ribosomal RNA gene, partial sequence blastn 7466 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrolaimus Panagrolaimus sp. B3 ARA-2018
22759881 22759881 PRJNA414036_P_NODE_32098_length_264_cov_2.213974_g30362_i0 PRJNA414036 32098 264 2.213974 5.84489136 Opisthokonta 33154 Nematoda Nematoda 52.8 0.024   NTclustered gi|339249468|ref|XM_003373674.1| 6334 g30362 i0 100 2.14772727272727 28 0 11 0 9 36 1320 1293 Trichinella spiralis putative UBA/TS-N domain protein (Tsp_10709) mRNA, complete cds blastn 567 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;