RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA414036" and tax_phylum = "Ctenophora"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ctenophora · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA414036 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2969436 2969436 PRJNA414036_P_NODE_29943_length_274_cov_4.903766_g28207_i0 PRJNA414036 29943 274 4.903766 13.43631884 Bolinopsis microptera 2820187 Ctenophora other_Eukaryota 65.8 3.23e-6   NTclustered gi|2700965936|ref|XM_063823524.1| 2820187 g28207 i0 91.489 0.171532846715328 47 4 17 0 131 177 1872 1826 PREDICTED: Bolinopsis microptera micronemal protein 4-like (LOC134815064), mRNA blastn 47 65.8 1 Eukaryota Opisthokonta Metazoa Ctenophora Tentaculata Lobata Bolinopsidae Bolinopsis Bolinopsis microptera
9346973 9346973 PRJNA414036_P_NODE_71968_length_178_cov_30.118881_g70229_i0 PRJNA414036 71968 178 30.118881 53.61160818 Beroe sp. 2909809 Ctenophora other_Eukaryota 102 1.47e-17   NTclustered gi|2808986007|gb|PQ363711.1| 2909809 g70229 i0 78.395 0.910112359550562 162 31 90 4 3 162 3745 3586 Beroe sp. isolate SRR5892576 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 162 102 1 Eukaryota Opisthokonta Metazoa Ctenophora Nuda Beroida Beroidae Beroe Beroe sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;