RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA414036" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA414036 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11897692 11897692 PRJNA414036_P_NODE_7950_length_464_cov_5.398601_g6626_i0 PRJNA414036 7950 464 5.398601 25.04950864 Tetrahymena thermophila 5911 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.013   NTclustered gi|829125522|ref|XM_001008654.2| 312017 g6626 i0 90.244 0.0883620689655172 41 4 9 0 73 113 2623 2663 Tetrahymena thermophila SB210 cation channel family protein partial mRNA blastn 41 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
16385332 16385332 PRJNA414036_P_NODE_42833_length_231_cov_4.081633_g41094_i0 PRJNA414036 42833 231 4.081633 9.42857223 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 122 1.55e-23   NTclustered gi|759083543|gb|KM222160.1| 5980 g41094 i0 100 30.9437229437229 66 0 58 0 10 75 714 649 Colpoda inflata voucher SXK2011071402 large subunit ribosomal RNA gene, partial sequence blastn 7148 122 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda inflata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;