RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA414036" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA414036 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3633782 3633782 PRJNA414036_P_NODE_44383_length_231_cov_3.469388_g42644_i0 PRJNA414036 44383 231 3.469388 8.01428628 Bacteria 2 Bacteria Bacteria 122 1.55e-23   NTclustered gi|298231328|emb|FN811199.1| 34034 g42644 i0 100 29.995670995671 66 0 29 0 10 75 28 93 Uncultured delta proteobacterium partial 16S rRNA gene, clone UMAB-cl-15 blastn 6929 122 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
16996299 16996299 PRJNA414036_P_NODE_85594_length_154_cov_873.411765_g83855_i0 PRJNA414036 85594 154 873.411765 1345.0541181 uncultured delta proteobacterium 34034 Bacteria Bacteria 158 2.6e-34   NTclustered gi|148723952|gb|EF520537.1| 34034 g83855 i0 88.462 84.9545454545455 130 15 84 0 22 151 1130 1259 Uncultured delta proteobacterium clone ADK-BTh02-06 16S ribosomal RNA gene, partial sequence blastn 13083 158 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17660494 17660494 PRJNA414036_P_NODE_4194_length_543_cov_3390.921260_g3404_i0 PRJNA414036 4194 543 3390.92126 18412.7024418 Polyangium 55 Bacteria Bacteria 710 0   NTclustered gi|146429340|gb|EF220156.1| 34034 g3404 i0 91.363 103.252302025783 521 41 96 4 10 528 531 13 Uncultured delta proteobacterium clone G06_ELL02 16S ribosomal RNA gene, partial sequence blastn 56066 713 0.995792426367461 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
21484686 21484686 PRJNA414036_P_NODE_57957_length_224_cov_27.783069_g56218_i0 PRJNA414036 57957 224 27.783069 62.23407456 Bacteria 2 Bacteria Bacteria 145 3.19e-30   NTclustered gi|152031374|gb|EF999009.1| 34034 g56218 i0 78.539 97.8035714285714 219 47 98 0 6 224 398 180 Uncultured delta proteobacterium clone M2 16S ribosomal RNA gene, partial sequence blastn 21908 145 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;