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contig_metadata

28 rows where analysis = "blastn", bioproject = "PRJNA414036" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 28 ✖

bioproject 1

  • PRJNA414036 · 28 ✖

analysis 1

  • blastn · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
418763 418763 PRJNA414036_P_NODE_41441_length_231_cov_4.994898_g39702_i0 PRJNA414036 41441 231 4.994898 11.53821438 Stichococcus bacillaris 37433 Plants Plants 158 4.25e-34   NTclustered gi|371782093|emb|HE610125.1| 37433 g39702 i0 100 7.64069264069264 85 0 37 0 10 94 7035 7119 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 1765 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
1082837 1082837 PRJNA414036_P_NODE_23181_length_315_cov_3.057143_g21450_i0 PRJNA414036 23181 315 3.057143 9.63000045 root 1 Root_unresolved Root_unresolved 122 2.2199999999999994e-23   NTclustered gi|1842576280|gb|MT477733.1| 3046 g21450 i0 100 21.6666666666667 66 0 21 0 241 306 237 172 Dunaliella salina strain PLY DF17 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 6825 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Dunaliellaceae Dunaliella Dunaliella salina
2358282 2358282 PRJNA414036_P_NODE_11942_length_412_cov_9.488064_g10345_i0 PRJNA414036 11942 412 9.488064 39.09082368 Prasiolales 135250 Plants Plants 521 2.509999999999999e-143   NTclustered gi|725675941|ref|NC_025528.1| 3083 g10345 i0 90.38 547.779126213592 395 28 96 4 1 395 124425 124809 'Chlorella' mirabilis culture-collection SAG:38.88 chloroplast, complete genome blastn 225685 521 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Prasiolaceae Edaphochlorella Edaphochlorella mirabilis
4245751 4245751 PRJNA414036_P_NODE_20164_length_336_cov_4.059801_g18438_i0 PRJNA414036 20164 336 4.059801 13.64093136 Stichococcus bacillaris 37433 Plants Plants 185 2.9999999999999996e-42   NTclustered gi|371782093|emb|HE610125.1| 37433 g18438 i0 97.248 10.1845238095238 109 3 32 0 221 329 7103 6995 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 3422 185 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
6796482 6796482 PRJNA414036_P_NODE_35706_length_248_cov_3.539906_g33970_i0 PRJNA414036 35706 248 3.539906 8.77896688 Blidingia sp. DT1 2022611 Plants Plants 137 6.019999999999999e-28   NTclustered gi|1220117795|gb|KY401415.1| 2022611 g33970 i0 96.386 33.2862903225806 83 3 68 0 158 240 1629 1547 Blidingia sp. DT1 28S ribosomal RNA gene, partial sequence blastn 8255 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Blidingia Blidingia sp. DT1
7460839 7460839 PRJNA414036_P_NODE_37686_length_240_cov_5.521951_g35947_i0 PRJNA414036 37686 240 5.521951 13.2526824 Trebouxia 13786 Plants Plants 165 2.66e-36   NTclustered gi|2154806798|gb|OL614541.1| 53267 g35947 i0 100 64.0708333333333 89 0 65 0 10 98 115 203 Trebouxia jamesii clone NJ2018044 small subunit ribosomal RNA gene, partial sequence blastn 15377 165 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia jamesii
8072123 8072123 PRJNA414036_P_NODE_75687_length_170_cov_5.711111_g73948_i0 PRJNA414036 75687 170 5.711111 9.7088887 Desmochloris sp. 3111645 Plants Plants 130 6.38e-26   NTclustered gi|2644500053|gb|PP079691.1| 3111645 g73948 i0 97.403 10.3941176470588 77 1 45 1 82 158 866 791 Desmochloris sp. isolate C7 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1767 130 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Chlorocystidales Chlorocystidaceae Desmochloris Desmochloris sp.
10011084 10011084 PRJNA414036_P_NODE_76208_length_169_cov_7.447761_g74469_i0 PRJNA414036 76208 169 7.447761 12.58671609 Eukaryota 2759 Plants Plants 279 5.95e-71   NTclustered gi|359385204|emb|FR865615.1| 55403 g74469 i0 100 89.4023668639053 151 0 89 0 10 160 136 286 Chlorella reisiglii genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, culture collection CCAP 11/8 blastn 15109 279 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Elliptochloris Elliptochloris subsphaerica
10622582 10622582 PRJNA414036_P_NODE_24649_length_305_cov_5.129630_g22917_i0 PRJNA414036 24649 305 5.12963 15.6453715 Lobosphaera incisa 312850 Plants Plants 145 4.56e-30   NTclustered gi|725539263|gb|KM821265.1| 312850 g22917 i0 98.765 69.4393442622951 81 1 69 0 225 305 136084 136164 Lobosphaera incisa chloroplast, complete genome blastn 21179 145 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Lobosphaera Lobosphaera incisa
11286186 11286186 PRJNA414036_P_NODE_26949_length_290_cov_8.905882_g25214_i0 PRJNA414036 26949 290 8.905882 25.8270578 Eukaryota 2759 Plants Plants 69.4 2.67e-7   NTclustered gi|723447007|ref|NC_025545.1| 38881 g25214 i0 85.294 14.3793103448276 68 9 23 1 217 283 1865 1932 Botryococcus braunii culture-collection SAG:807-1 chloroplast, complete genome blastn 4170 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Botryococcus Botryococcus braunii
15721361 15721361 PRJNA414036_P_NODE_24813_length_304_cov_4.568773_g23081_i0 PRJNA414036 24813 304 4.568773 13.88906992 Stichococcus bacillaris 37433 Plants Plants 298 3.3e-76   NTclustered gi|371782093|emb|HE610125.1| 37433 g23081 i0 97.688 16.9375 173 4 74 0 8 180 6995 7167 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 5149 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
16385291 16385291 PRJNA414036_P_NODE_26693_length_292_cov_2.754864_g24959_i0 PRJNA414036 26693 292 2.754864 8.04420288 Trebouxia 13786 Plants Plants 183 9.2e-42   NTclustered gi|1273623725|gb|KY033354.1| 285713 g24959 i0 92.857 60.6541095890411 126 9 65 0 158 283 6749 6874 Uncultured Trebouxia photobiont voucher Lendemer 46119 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 17711 183 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
16996126 16996126 PRJNA414036_P_NODE_21474_length_326_cov_5.305842_g19746_i0 PRJNA414036 21474 326 5.305842 17.29704492 Stichococcus bacillaris 37433 Plants Plants 235 2.8299999999999996e-57   NTclustered gi|371782093|emb|HE610125.1| 37433 g19746 i0 98.496 7.80674846625767 133 2 41 0 10 142 7035 7167 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 2545 235 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
16996201 16996201 PRJNA414036_P_NODE_43754_length_231_cov_3.693878_g42015_i0 PRJNA414036 43754 231 3.693878 8.53285818 Chloroidium sp. UTEX 3077 2686440 Plants Plants 122 1.55e-23   NTclustered gi|1785188440|gb|MN646686.1| 2686440 g42015 i0 100 7.24675324675325 66 0 57 0 10 75 55296 55361 Chloroidium sp. UTEX 3077 mitochondrion, complete genome blastn 1674 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. UTEX 3077
17660561 17660561 PRJNA414036_P_NODE_6934_length_480_cov_328.871910_g5728_i0 PRJNA414036 6934 480 328.87191 1578.585168 Chaetophoraceae 33093 Plants Plants 97.1 2.13e-15   NTclustered gi|115349964|ref|NC_008372.1| 55999 g5728 i0 78.065 4.3125 155 33 32 1 1 155 681 528 Stigeoclonium helveticum chloroplast, complete genome blastn 2070 97.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Stigeoclonium Stigeoclonium helveticum
18934322 18934322 PRJNA414036_P_NODE_27315_length_288_cov_8.221344_g25580_i0 PRJNA414036 27315 288 8.221344 23.67747072 Eukaryota 2759 Plants Plants 69.4 2.65e-7   NTclustered gi|723447007|ref|NC_025545.1| 38881 g25580 i0 85.294 1.17013888888889 68 9 23 1 90 156 1865 1932 Botryococcus braunii culture-collection SAG:807-1 chloroplast, complete genome blastn 337 69.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Botryococcus Botryococcus braunii
18934371 18934371 PRJNA414036_P_NODE_45775_length_231_cov_3.091837_g44036_i0 PRJNA414036 45775 231 3.091837 7.14214347 Trebouxia 13786 Plants Plants 119 2.01e-22   NTclustered gi|189909382|gb|EU725860.1| 13787 g44036 i0 98.507 52.5541125541126 67 1 29 0 12 78 923 857 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 12140 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
18934375 18934375 PRJNA414036_P_NODE_46055_length_231_cov_3.020408_g44316_i0 PRJNA414036 46055 231 3.020408 6.97714248 Trebouxiophyceae 75966 Plants Plants 117 7.22e-22   NTclustered gi|189909382|gb|EU725860.1| 13787 g44316 i0 98.485 28.8571428571429 66 1 29 0 157 222 586 521 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 6666 117 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
19544496 19544496 PRJNA414036_P_NODE_22416_length_320_cov_3.210526_g20686_i0 PRJNA414036 22416 320 3.210526 10.2736832 Chlorella vulgaris 3077 Plants Plants 93.5 1.77e-14   NTclustered gi|77627727|dbj|AB237642.1| 3077 g20686 i0 91.176 17.109375 68 6 21 0 11 78 2098 2031 Chlorella vulgaris NIES:227 gene for 28S ribosomal RNA, partial sequence blastn 5475 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
19544612 19544612 PRJNA414036_P_NODE_56096_length_230_cov_2.712821_g54357_i0 PRJNA414036 56096 230 2.712821 6.2394883 Capsosiphon fulvescens 205396 Plants Plants 71.3 5.67e-8   NTclustered gi|1514839976|gb|MH790906.1| 205396 g54357 i0 89.286 1.94782608695652 56 6 24 0 9 64 2055 2000 Capsosiphon fulvescens isolate typeB plastid, complete genome blastn 448 71.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Capsosiphon Capsosiphon fulvescens
21484598 21484598 PRJNA414036_P_NODE_30677_length_270_cov_10.531915_g28941_i0 PRJNA414036 30677 270 10.531915 28.4361705 Chlorophyta 3041 Plants Plants 198 3e-46   NTclustered gi|535783|dbj|D17810.1|CHLLSURRNA 63676 g28941 i0 97.414 46.5074074074074 116 3 65 0 83 198 2289 2174 Chlorella ellipsoidea gene for large subunit rRNA, with group-I self-splicing intron blastn 12557 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
21484611 21484611 PRJNA414036_P_NODE_35717_length_248_cov_3.295775_g33981_i0 PRJNA414036 35717 248 3.295775 8.173522 Eukaryota 2759 Plants Plants 156 1.66e-33   NTclustered gi|520187546|emb|HF920655.1| 104533 g33981 i0 98.851 36 87 1 35 0 154 240 1207 1293 Schizomeris leibleinii 5.8S rRNA gene, ITS2 and partial 28S rRNA gene, strain SAG 44.84 blastn 8928 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Schizomeridaceae Schizomeris Schizomeris leibleinii
21484649 21484649 PRJNA414036_P_NODE_44597_length_231_cov_3.408163_g42858_i0 PRJNA414036 44597 231 3.408163 7.87285653 root 1 Root_unresolved Root_unresolved 106 1.56e-18   NTclustered gi|189909382|gb|EU725860.1| 13787 g42858 i0 96.825 33.5757575757576 63 2 55 0 157 219 1436 1498 Trebouxia asymmetrica strain SAG 48.88 23S large subunit ribosomal RNA (rrnL) gene, partial sequence; chloroplast blastn 7756 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia asymmetrica
21484703 21484703 PRJNA414036_P_NODE_65177_length_197_cov_6.055556_g63438_i0 PRJNA414036 65177 197 6.055556 11.92944532 Trebouxia 13786 Plants Plants 204 4.449999999999999e-48   NTclustered gi|94448695|emb|AJ969523.1| 285713 g63438 i0 100 84.48730964467 110 0 85 0 79 188 1352 1243 Uncultured Trebouxia photobiont 18S rRNA gene (partial), ITS1, 5.8S rRNA gene, ITS2 and 26S rRNA gene (partial), isolate L-43 blastn 16644 204 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia uncultured Trebouxia photobiont
22095165 22095165 PRJNA414036_P_NODE_39738_length_233_cov_4.424242_g37999_i0 PRJNA414036 39738 233 4.424242 10.30848386 Stichococcus bacillaris 37433 Plants Plants 158 4.3e-34   NTclustered gi|371782093|emb|HE610125.1| 37433 g37999 i0 100 7.57510729613734 85 0 36 0 10 94 7035 7119 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 1765 158 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
22759880 22759880 PRJNA414036_P_NODE_31818_length_265_cov_3.660870_g30082_i0 PRJNA414036 31818 265 3.66087 9.7013055 Halofilum 1929135 Plants Plants 211 3.78e-50   NTclustered gi|1189013853|gb|MF034634.1| 97102 g30082 i0 100 47.6452830188679 114 0 69 0 152 265 1346 1459 Halofilum salinum strain SAG 1.95 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12626 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales   Halofilum Halofilum salinum
23370767 23370767 PRJNA414036_P_NODE_2199_length_624_cov_3.516129_g1759_i0 PRJNA414036 2199 624 3.516129 21.94064496 Monoraphidium neglectum 145388 Plants Plants 54.7 0.017   NTclustered gi|926778473|ref|XM_014042257.1| 145388 g1759 i0 90.476 0.0673076923076923 42 3 7 1 438 478 1129 1170 Monoraphidium neglectum hypothetical protein mRNA blastn 42 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
24645157 24645157 PRJNA414036_P_NODE_40640_length_231_cov_6.326531_g38901_i0 PRJNA414036 40640 231 6.326531 14.61428661 Stichococcus bacillaris 37433 Plants Plants 108 4.34e-19   NTclustered gi|371782093|emb|HE610125.1| 37433 g38901 i0 95.522 4.46320346320346 67 3 29 0 9 75 7034 7100 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 1031 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;