RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA408129" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA408129 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2358196 2358196 PRJNA408129_S_NODE_35802_length_150_cov_2.858407_g35784_i0 PRJNA408129 35802 150 2.858407 4.2876105 Borreliella 64895 Bacteria Bacteria 54.7 0.003   NTclustered gi|1112967167|gb|CP018265.1| 29518 g35784 i0 100 1.35333333333333 29 0 19 0 107 135 16748 16720 Borreliella afzelii strain BO23 plasmid lp28-3, partial sequence blastn 203 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella afzelii
10010791 10010791 PRJNA408129_S_NODE_16148_length_191_cov_2.422078_g16130_i0 PRJNA408129 16148 191 2.422078 4.62616898 Leptospira 171 Bacteria Bacteria 63.9 7.59e-6   NTclustered gi|1634136587|gb|CP039283.1| 173 g16130 i0 97.297 22.1099476439791 37 1 19 0 51 87 3608453 3608417 Leptospira interrogans strain FMAS_AW1 chromosome I, complete sequence blastn 4223 63.9 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira interrogans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;