RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA408129" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA408129 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1693238 1693238 PRJNA408129_S_NODE_21782_length_174_cov_2.948905_g21764_i0 PRJNA408129 21782 174 2.948905 5.1310947 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 56.5 0.001   NTclustered gi|421975963|gb|JQ913051.1| 99802 g21764 i0 100 0.344827586206897 30 0 17 0 31 60 713 742 Spirometra erinaceieuropaei proteasome subunit alpha type 4 Spirometra erinaceieuropaei mRNA, complete cds blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
5522148 5522148 PRJNA408129_S_NODE_17465_length_186_cov_4.979866_g17447_i0 PRJNA408129 17465 186 4.979866 9.26255076 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.016   NTclustered gi|687239408|emb|LK399621.1| 57078 g17447 i0 100 0.150537634408602 28 0 15 0 115 142 214 241 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_contig0000167 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
6796290 6796290 PRJNA408129_S_NODE_4386_length_277_cov_2.841667_g4368_i0 PRJNA408129 4386 277 2.841667 7.87141759 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 54.7 0.007   NTclustered gi|690453515|emb|LN000501.1| 99802 g4368 i0 100 0.104693140794224 29 0 10 0 22 50 25036 25008 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0000498 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
13172114 13172114 PRJNA408129_S_NODE_20591_length_177_cov_3.485714_g20573_i0 PRJNA408129 20591 177 3.485714 6.16971378 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 65.8 1.92e-6   NTclustered gi|687230000|emb|LK396402.1| 57078 g20573 i0 91.837 3.11299435028249 49 1 27 3 61 108 909 955 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0003209 blastn 551 65.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
15110445 15110445 PRJNA408129_S_NODE_15452_length_193_cov_8.692308_g15434_i0 PRJNA408129 15452 193 8.692308 16.77615444 Metazoa 33208 Platyhelminthes Platyhelminthes 291 3.2399999999999994e-74   NTclustered gi|60687563|gb|AY914894.1| 6182 g15434 i0 99.379 83.419689119171 161 0 83 1 14 173 722 562 Schistosoma japonicum unknown mRNA blastn 16100 291 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;