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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA408129" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA408129 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
418279 418279 PRJNA408129_S_NODE_11161_length_214_cov_29.361582_g11143_i0 PRJNA408129 11161 214 29.361582 62.83378548 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 211 2.94e-50   NTclustered gi|1378171755|ref|XM_024720355.1| 4781 g11143 i0 93.056 2.27102803738318 144 10 67 0 46 189 477 334 Plasmopara halstedii CRN-like protein (PHALS_06969), partial mRNA blastn 486 211 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
1082755 1082755 PRJNA408129_S_NODE_761_length_408_cov_13.568733_g743_i0 PRJNA408129 761 408 13.568733 55.36043064 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 610 5.15e-170   NTclustered gi|2651589115|gb|PP108238.1| 4785 g743 i0 97.479 91.031862745098 357 9 88 0 22 378 23130 22774 Phytophthora cinnamomi strain CT09CHAP1 mitochondrion, complete genome blastn 37141 616 0.99025974025974 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
8071664 8071664 PRJNA408129_S_NODE_20047_length_179_cov_1.091549_g20029_i0 PRJNA408129 20047 179 1.091549 1.95387271 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 71.3 4.19e-8   NTclustered gi|2794739894|ref|XM_067964161.1| 4779 g20029 i0 85.294 0.379888268156425 68 10 38 0 110 177 449 382 Bremia lactucae uncharacterized protein (CCR75_006089), partial mRNA blastn 68 71.3 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
11897192 11897192 PRJNA408129_S_NODE_14210_length_199_cov_2.320988_g14192_i0 PRJNA408129 14210 199 2.320988 4.61876612 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 161 2.75e-35   NTclustered gi|673051696|ref|XM_008881587.1| 157072 g14192 i0 86.486 17.0050251256281 148 18 74 2 52 198 615 469 Aphanomyces invadans 40S ribosomal protein mRNA blastn 3384 161 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
13172244 13172244 PRJNA408129_S_NODE_3471_length_293_cov_21794.503906_g3453_i0 PRJNA408129 3471 293 21794.503906 63857.89644458 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 337 6.699999999999997e-88   NTclustered gi|33520250|gb|AY273995.1| 92964 g3453 i0 97.475 29.3617747440273 198 4 67 1 13 209 511 708 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 8603 337 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
15721235 15721235 PRJNA408129_S_NODE_6593_length_248_cov_4.815166_g6575_i0 PRJNA408129 6593 248 4.815166 11.94161168 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 412 8.93e-111   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g6575 i0 97.908 100.379032258065 239 4 96 1 1 239 9213 9450 Pythium ultimum mitochondrion, complete genome blastn 24894 412 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
20208892 20208892 PRJNA408129_S_NODE_1996_length_333_cov_70.577703_g1978_i0 PRJNA408129 1996 333 70.577703 235.02375099 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 542 1.53e-149   NTclustered gi|440919553|gb|JX436353.1| 1279233 g1978 i0 98.071 92.981981981982 311 6 93 0 20 330 33 343 Myzocytiopsis sp. GPR-2013 28S ribosomal RNA gene, partial sequence blastn 30963 542 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Myzocytiopsis Myzocytiopsis sp. GPR-2013
22094859 22094859 PRJNA408129_S_NODE_27658_length_162_cov_2.232000_g27640_i0 PRJNA408129 27658 162 2.232 3.61584 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 65.8 1.73e-6   NTclustered gi|673042468|ref|XM_008876973.1| 157072 g27640 i0 97.368 0.234567901234568 38 1 23 0 2 39 653 690 Aphanomyces invadans hypothetical protein mRNA blastn 38 65.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
25308892 25308892 PRJNA408129_S_NODE_22820_length_171_cov_50.328358_g22802_i0 PRJNA408129 22820 171 50.328358 86.06149218 Lagenidium 4802 SAR_Eukaryotes SAR_Eukaryotes 278 2.17e-70   NTclustered gi|319769386|gb|HQ343198.1| 884622 g22802 i0 99.346 89.9181286549708 153 1 89 0 15 167 544 696 Lagenidium sp. PWL-2010f strain CBS 127284 18S ribosomal RNA gene, partial sequence blastn 15376 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium sp. PWL-2010f

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;