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contig_metadata

13 rows where analysis = "blastn", bioproject = "PRJNA408129" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 13 ✖

bioproject 1

  • PRJNA408129 · 13 ✖

analysis 1

  • blastn · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4245384 4245384 PRJNA408129_S_NODE_12864_length_205_cov_4.464286_g12846_i0 PRJNA408129 12864 205 4.464286 9.1517863 Trebouxia lynnae 1825957 Plants Plants 353 4.38e-93   NTclustered gi|1812100161|ref|NC_045839.1| 1825957 g12846 i0 98.03 27.390243902439 203 4 99 0 3 205 197226 197428 Trebouxia sp. TR9 chloroplast, partial genome blastn 5615 353 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia lynnae
4245405 4245405 PRJNA408129_S_NODE_14904_length_196_cov_2.232704_g14886_i0 PRJNA408129 14904 196 2.232704 4.37609984 Trebouxia sp. SL0000003 3350044 Plants Plants 108 3.57e-19   NTclustered gi|2917929623|emb|OZ234911.1| 3350044 g14886 i0 95.522 0.341836734693878 67 3 34 0 2 68 3352184 3352250 Trebouxia sp. SL0000003 genome assembly, chromosome: 6 blastn 67 108 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
5522209 5522209 PRJNA408129_S_NODE_24645_length_167_cov_20.315385_g24627_i0 PRJNA408129 24645 167 20.315385 33.92669295 Polulichloris maxima 2704661 Plants Plants 244 2.15e-60   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g24627 i0 96.599 10.3173652694611 147 5 88 0 2 148 125451 125305 Polulichloris maxima clone L123 chloroplast, complete genome blastn 1723 244 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
6796102 6796102 PRJNA408129_S_NODE_15026_length_195_cov_5.626582_g15008_i0 PRJNA408129 15026 195 5.626582 10.9718349 Microspora stagnorum 163317 Plants Plants 141 3.5e-29   NTclustered gi|563940464|ref|NC_022862.1| 163317 g15008 i0 91.262 0.528205128205128 103 9 53 0 85 187 271 169 Microspora stagnorum culture-collection SAG:51.86 mitochondrion, complete genome blastn 103 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae   Microsporaceae Microspora Microspora stagnorum
9346605 9346605 PRJNA408129_S_NODE_31528_length_156_cov_1.411765_g31510_i0 PRJNA408129 31528 156 1.411765 2.2023534 Chlorella variabilis 554065 Plants Plants 152 1.23e-32   NTclustered gi|552809028|ref|XM_005842781.1| 554065 g31510 i0 84.868 11.3846153846154 152 21 97 2 6 156 299 449 Chlorella variabilis hypothetical protein (CHLNCDRAFT_37706) mRNA, complete cds blastn 1776 152 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
13172038 13172038 PRJNA408129_S_NODE_13031_length_204_cov_4.664671_g13013_i0 PRJNA408129 13031 204 4.664671 9.51592884 Auxenochlorella protothecoides 3075 Plants Plants 111 2.89e-20   NTclustered gi|760439244|ref|XM_011398389.1| 3075 g13013 i0 83.2 5.76960784313725 125 17 60 4 16 138 591 713 Auxenochlorella protothecoides 60S ribosomal protein L7-2 partial mRNA blastn 1177 111 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
13172103 13172103 PRJNA408129_S_NODE_19451_length_180_cov_4.216783_g19433_i0 PRJNA408129 19451 180 4.216783 7.5902094 Characiochloris acuminata 167768 Plants Plants 187 4.01e-43   NTclustered gi|959124528|ref|NC_028584.1| 167768 g19433 i0 87.805 117.605555555556 164 14 88 5 4 162 94109 93947 Characiochloris acuminata culture-collection SAG:31.95 chloroplast, complete genome blastn 21169 187 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Characiochloridaceae Characiochloris Characiochloris acuminata
13172141 13172141 PRJNA408129_S_NODE_2331_length_323_cov_8.500000_g2313_i0 PRJNA408129 2331 323 8.5 27.455 Nannochloris normandinae 926285 Plants Plants 553 6.819999999999998e-153   NTclustered gi|922575245|gb|JQ921007.1| 926285 g2313 i0 98.714 95.9009287925697 311 4 96 0 12 322 519 829 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 30976 553 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
14447198 14447198 PRJNA408129_S_NODE_10332_length_219_cov_12.758242_g10314_i0 PRJNA408129 10332 219 12.758242 27.94054998 uncultured Symbiochloris 2562465 Plants Plants 281 2.27e-71   NTclustered gi|2509725906|gb|OR042192.1| 2562465 g10314 i0 91.304 93.4063926940639 207 17 95 1 12 218 1017 1222 Uncultured Symbiochloris clone BW01 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 20456 281 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Symbiochloris
14447346 14447346 PRJNA408129_S_NODE_27892_length_161_cov_8.709677_g27874_i0 PRJNA408129 27892 161 8.709677 14.02257997 Trebouxia aggregata 160068 Plants Plants 122 1.0099999999999999e-23   NTclustered gi|162134308|gb|EU123972.1| 160068 g27874 i0 89.583 0.596273291925466 96 10 60 0 2 97 7905 8000 Trebouxia aggregata strain SAG 219-1d J protein of photosystem II (psbJ), L protein of photosystem II (psbL), cytochrome b559 beta subunit of photosystem II (psbF), and cytochrome b559 alpha subunit of photosystem II (psbE) genes, complete cds; chloroplast blastn 96 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
16385127 16385127 PRJNA408129_S_NODE_18713_length_182_cov_5.572414_g18695_i0 PRJNA408129 18713 182 5.572414 10.14179348 root 1 Root_unresolved Root_unresolved 52.8 0.015   NTclustered gi|1008861523|ref|NC_029671.1| 31300 g18695 i0 100 2.15384615384615 28 0 15 0 149 176 3227 3254 Mychonastes homosphaera strain CAUP H6502 chloroplast, complete genome blastn 392 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Mychonastaceae Mychonastes Mychonastes homosphaera
24644793 24644793 PRJNA408129_S_NODE_24040_length_169_cov_2.227273_g24022_i0 PRJNA408129 24040 169 2.227273 3.76409137 Stichococcus bacillaris 37433 Plants Plants 292 7.64e-75   NTclustered gi|723457333|ref|NC_025527.1| 37433 g24022 i0 99.383 9.24852071005917 162 0 96 1 8 169 50344 50184 Stichococcus bacillaris culture-collection UTEX:176 chloroplast, complete genome blastn 1563 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
25308871 25308871 PRJNA408129_S_NODE_17420_length_186_cov_7.228188_g17402_i0 PRJNA408129 17420 186 7.228188 13.44442968 Trebouxia 13786 Plants Plants 311 2.38e-80   NTclustered gi|2105087|emb|Z95381.1| 53268 g17402 i0 99.415 92.005376344086 171 1 92 0 16 186 132 302 T.arboricola 26S rRNA gene blastn 17113 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia arboricola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;