RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA408129" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA408129 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11897168 11897168 PRJNA408129_S_NODE_11550_length_212_cov_7.337143_g11532_i0 PRJNA408129 11550 212 7.337143 15.55474316 Acrasis kona 1008807 Heterolobosea other_Eukaryota 193 1.05e-44   NTclustered gi|756877081|ref|NC_026286.1| 1008807 g11532 i0 84.466 0.971698113207547 206 20 97 6 5 209 716 910 Acrasis kona culture-collection ATCC:MYA-3509 mitochondrion, complete genome blastn 206 193 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
24644911 24644911 PRJNA408129_S_NODE_4480_length_275_cov_8.613445_g4462_i0 PRJNA408129 4480 275 8.613445 23.68697375 Acrasis kona 1008807 Heterolobosea other_Eukaryota 324 4.85e-84   NTclustered gi|756877081|ref|NC_026286.1| 1008807 g4462 i0 91.176 4.37090909090909 238 21 87 0 28 265 2398 2635 Acrasis kona culture-collection ATCC:MYA-3509 mitochondrion, complete genome blastn 1202 324 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;