RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA408129" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA408129 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1693164 1693164 PRJNA408129_S_NODE_11422_length_213_cov_4.039773_g11404_i0 PRJNA408129 11422 213 4.039773 8.60471649 Dictyostelium discoideum 44689 Evosea other_Eukaryota 58.4 4.03e-4   NTclustered gi|66807038|ref|XM_632150.1| 352472 g11404 i0 97.143 0.450704225352113 35 0 16 1 154 188 951 984 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0287331) mRNA, complete cds blastn 96 58.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
22759757 22759757 PRJNA408129_S_NODE_4278_length_279_cov_2.289256_g4260_i0 PRJNA408129 4278 279 2.289256 6.38702424 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 396 1.03e-105   NTclustered gi|399764275|gb|JQ271786.1| 1215995 g4260 i0 92.754 13.9749103942652 276 16 97 3 7 278 197 472 Tubulinea group 04 sp. CAL5 18S ribosomal RNA gene, partial sequence blastn 3899 396 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. CAL5
23370607 23370607 PRJNA408129_S_NODE_3959_length_284_cov_5.336032_g3941_i0 PRJNA408129 3959 284 5.336032 15.15433088 Clydonella sp. ATCC 50884 218662 Discosea other_Eukaryota 91.6 5.56e-14   NTclustered gi|27803578|gb|AY183892.1| 218662 g3941 i0 76.97 28.5140845070423 165 34 58 3 74 237 892 1053 Clydonella sp. ATCC 50884 small subunit ribosomal RNA gene, complete sequence blastn 8098 91.6 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Clydonella Clydonella sp. ATCC 50884

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;