RNAquarium Metadata Server
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contig_metadata

29 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 29 ✖

bioproject 1

  • PRJNA407886 · 29 ✖

analysis 1

  • blastn · 29 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
417625 417625 PRJNA407886_P_NODE_53701_length_292_cov_1.406393_g52007_i0 PRJNA407886 53701 292 1.406393 4.10666756 Rhizobium phage RHEph12 2836128 Viruses Viruses 54.7 0.008   NTclustered gi|2071737242|gb|MW980064.1| 2836128 g52007 i0 96.875 0.10958904109589 32 1 11 0 160 191 122935 122904 Rhizobium phage RHEph12, complete genome blastn 32 54.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Rhizobium phage RHEph12
417982 417982 PRJNA407886_P_NODE_72301_length_249_cov_0.875000_g70607_i0 PRJNA407886 72301 249 0.875 2.17875 Caudoviricetes sp. 2832643 Viruses Viruses 381 2.5299999999999995e-101   NTclustered gi|2915015279|gb|OR222516.1| 2832643 g70607 i0 94.378 1 249 13 100 1 1 249 16325 16572 MAG: Caudoviricetes sp. isolate MSP0423 genomic sequence blastn 249 381 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
2967939 2967939 PRJNA407886_P_NODE_31303_length_406_cov_1.204204_g29609_i0 PRJNA407886 31303 406 1.204204 4.88906824 Potyvirus phaseovulgaris 3240595 Viruses Viruses 750 0   NTclustered gi|339905491|gb|HM776067.1| 28353 g29609 i0 100 100 406 0 100 0 1 406 501 906 Bean common mosaic virus strain peanut stripe isolate DY2 polyprotein gene, partial cds blastn 40600 750 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus phaseovulgaris
2968769 2968769 PRJNA407886_P_NODE_72843_length_248_cov_1.760000_g71149_i0 PRJNA407886 72843 248 1.76 4.3648 Capillovirus mali 28347 Viruses Viruses 401 1.9299999999999994e-107   NTclustered gi|381393149|gb|JQ308181.1| 28347 g71149 i0 95.951 99.5846774193548 247 10 99 0 1 247 4570 4816 Apple stem grooving virus isolate ASGV-CHN, complete genome blastn 24697 401 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
6794655 6794655 PRJNA407886_P_NODE_20366_length_562_cov_2.316973_g18681_i0 PRJNA407886 20366 562 2.316973 13.02138826 Capillovirus mali 28347 Viruses Viruses 756 0   NTclustered gi|1463747790|gb|MF616381.1| 28347 g18681 i0 90.925 48.6903914590747 562 51 100 0 1 562 2812 2251 Capillovirus mali isolate JLSG, complete genome blastn 27364 756 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
6795056 6795056 PRJNA407886_P_NODE_37606_length_360_cov_1.285714_g35912_i0 PRJNA407886 37606 360 1.285714 4.6285704 Capillovirus mali 28347 Viruses Viruses 544 4.6199999999999996e-150   NTclustered gi|1783301349|gb|MK599422.1| 28347 g35912 i0 93.889 30.7972222222222 360 22 100 0 1 360 4440 4081 Capillovirus mali isolate L3, complete genome blastn 11087 544 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
9346220 9346220 PRJNA407886_P_NODE_76768_length_245_cov_0.895349_g75074_i0 PRJNA407886 76768 245 0.895349 2.19360505 Capillovirus mali 28347 Viruses Viruses 368 1.93e-97   NTclustered gi|390994805|gb|JX080219.1| 28347 g75074 i0 93.852 21.9959183673469 244 15 99 0 2 245 290 47 Apple stem grooving virus isolate Aus-V2 movement protein and polyprotein genes, partial cds blastn 5389 368 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
9346222 9346222 PRJNA407886_P_NODE_76888_length_245_cov_0.895349_g75194_i0 PRJNA407886 76888 245 0.895349 2.19360505 Caudoviricetes sp. 2832643 Viruses Viruses 363 8.989999999999999e-96   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g75194 i0 93.443 298.848979591837 244 16 99 0 1 244 17709 17952 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 73218 363 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
11285898 11285898 PRJNA407886_P_NODE_75509_length_246_cov_0.890173_g73815_i0 PRJNA407886 75509 246 0.890173 2.18982558 Viruses 10239 Viruses Viruses 444 3.14e-120   NTclustered gi|431809676|ref|NC_019914.1| 1147044 g73815 i0 99.187 18.4105691056911 246 2 100 0 1 246 34118 34363 Staphylococcus phage StB27, complete genome blastn 4529 444 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Staphylococcus phage StB27
13171643 13171643 PRJNA407886_P_NODE_66571_length_258_cov_1.372973_g64877_i0 PRJNA407886 66571 258 1.372973 3.54227034 Potyvirus phaseovulgaris 3240595 Viruses Viruses 466 7.08e-127   NTclustered gi|2129411261|gb|MZ442684.1| 28353 g64877 i0 99.225 75.9922480620155 258 2 100 0 1 258 5847 5590 Peanut stripe virus isolate AYD-9 polyprotein gene, complete cds blastn 19606 466 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus phaseovulgaris
13835808 13835808 PRJNA407886_P_NODE_52311_length_296_cov_2.331839_g50617_i0 PRJNA407886 52311 296 2.331839 6.90224344 Capillovirus 12174 Viruses Viruses 459 1.39e-124   NTclustered gi|1845308772|gb|MN495979.1| 28347 g50617 i0 94.595 100.027027027027 296 16 100 0 1 296 5658 5953 Capillovirus mali, complete genome blastn 29608 459 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
14446182 14446182 PRJNA407886_P_NODE_34932_length_377_cov_3.828947_g33238_i0 PRJNA407886 34932 377 3.828947 14.43513019 Lentivirus humimdef1 3418650 Viruses Viruses 65.8 4.61e-6   NTclustered gi|37701115|gb|AY397046.1| 11676 g33238 i0 97.368 3.48541114058355 38 1 10 0 188 225 297 334 HIV-1 strain A|A15 from Ghana gag protein (gag) gene, partial cds blastn 1314 65.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
14446670 14446670 PRJNA407886_P_NODE_59152_length_276_cov_2.674877_g57458_i0 PRJNA407886 59152 276 2.674877 7.38266052 Trichovirus mali 12175 Viruses Viruses 364 2.869999999999999e-96   NTclustered gi|526455363|gb|KF134394.1| 12175 g57458 i0 90.545 95.3659420289855 275 26 99 0 1 275 273 547 Apple chlorotic leaf spot virus isolate FF coat protein gene, partial cds blastn 26321 364 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Trichovirus Trichovirus mali
15110240 15110240 PRJNA407886_P_NODE_67612_length_255_cov_2.560440_g65918_i0 PRJNA407886 67612 255 2.56044 6.529122 root 1 Root_unresolved Root_unresolved 267 7.6e-67   NTclustered gi|2452970428|gb|OQ518271.1| 10515 g65918 i0 100 97.0549019607843 144 0 96 0 107 250 11236 11379 Human adenovirus 2 isolate HAdV-C2/USA/8A5/2011, complete genome blastn 24749 267 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
15719788 15719788 PRJNA407886_P_NODE_27073_length_450_cov_1.480106_g25380_i0 PRJNA407886 27073 450 1.480106 6.660477 Capillovirus mali 28347 Viruses Viruses 660 0   NTclustered gi|381393149|gb|JQ308181.1| 28347 g25380 i0 93.111 55.6111111111111 450 31 100 0 1 450 745 1194 Apple stem grooving virus isolate ASGV-CHN, complete genome blastn 25025 660 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
15720187 15720187 PRJNA407886_P_NODE_47633_length_313_cov_1.283333_g45939_i0 PRJNA407886 47633 313 1.283333 4.01683229 Capillovirus mali 28347 Viruses Viruses 512 1.12e-140   NTclustered gi|930068503|gb|KR106996.1| 28347 g45939 i0 96.166 97.8051118210863 313 12 100 0 1 313 6034 6346 Capillovirus mali isolate ASGV_kfp, complete genome blastn 30613 512 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
16995590 16995590 PRJNA407886_P_NODE_77354_length_244_cov_2.701754_g75660_i0 PRJNA407886 77354 244 2.701754 6.59227976 Capillovirus mali 28347 Viruses Viruses 412 8.759999999999998e-111   NTclustered gi|939193295|gb|KR185346.1| 28347 g75660 i0 97.51 98.7213114754098 241 6 99 0 4 244 5925 5685 Capillovirus mali isolate Cuiguan, complete genome blastn 24088 412 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
18268287 18268287 PRJNA407886_P_NODE_10355_length_959_cov_1.881490_g9050_i0 PRJNA407886 10355 959 1.88149 18.0434891 Capillovirus mali 28347 Viruses Viruses 1290 0   NTclustered gi|939193295|gb|KR185346.1| 28347 g9050 i0 90.928 47.6350364963504 959 87 100 0 1 959 3039 3997 Capillovirus mali isolate Cuiguan, complete genome blastn 45682 1290 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
19542735 19542735 PRJNA407886_P_NODE_19636_length_579_cov_1.563241_g17955_i0 PRJNA407886 19636 579 1.563241 9.05116539 Capillovirus mali 28347 Viruses Viruses 795 0   NTclustered gi|939193295|gb|KR185346.1| 28347 g17955 i0 92.171 96.5613126079447 562 44 97 0 1 562 5140 5701 Capillovirus mali isolate Cuiguan, complete genome blastn 55909 795 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
19542887 19542887 PRJNA407886_P_NODE_26836_length_453_cov_1.415789_g25144_i0 PRJNA407886 26836 453 1.415789 6.41352417 Capillovirus mali 28347 Viruses Viruses 606 7.469999999999996e-169   NTclustered gi|2842974839|gb|OR763046.1| 28347 g25144 i0 93.204 90.6578366445916 412 28 91 0 42 453 5557 5146 Capillovirus mali isolate A3, complete genome blastn 41068 606 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
19543940 19543940 PRJNA407886_P_NODE_79836_length_242_cov_1.798817_g78142_i0 PRJNA407886 79836 242 1.798817 4.35313714 Caudoviricetes sp. 2832643 Viruses Viruses 414 2.41e-111   NTclustered gi|2054457545|tpg|BK031457.1| 2832643 g78142 i0 97.521 29.8388429752066 242 6 100 0 1 242 18436 18195 MAG TPA_asm: Caudoviricetes sp. isolate ctiLO4, partial genome blastn 7221 414 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
20818741 20818741 PRJNA407886_P_NODE_26837_length_453_cov_1.410526_g25145_i0 PRJNA407886 26837 453 1.410526 6.38968278 Capillovirus mali 28347 Viruses Viruses 784 0   NTclustered gi|939193295|gb|KR185346.1| 28347 g25145 i0 98.004 99.3399558498896 451 9 99 0 1 451 5905 6355 Capillovirus mali isolate Cuiguan, complete genome blastn 45001 784 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
20819821 20819821 PRJNA407886_P_NODE_78857_length_243_cov_1.282353_g77163_i0 PRJNA407886 78857 243 1.282353 3.11611779 Capillovirus mali 28347 Viruses Viruses 372 1.48e-98   NTclustered gi|939193295|gb|KR185346.1| 28347 g77163 i0 94.583 2.92592592592593 240 13 99 0 1 240 751 990 Capillovirus mali isolate Cuiguan, complete genome blastn 711 372 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
22093618 22093618 PRJNA407886_P_NODE_30438_length_414_cov_1.741935_g28744_i0 PRJNA407886 30438 414 1.741935 7.2116109 Gonad-specific virus 134999 Viruses Viruses 56.5 0.003   NTclustered gi|1059791114|gb|AH009832.2| 134999 g28744 i0 100 0.072463768115942 30 0 7 0 89 118 1412 1441 Gonad-specific virus sequence blastn 30 56.5 1 Viruses       Naldaviricetes Lefavirales Baculoviridae   Gonad-specific virus
23369335 23369335 PRJNA407886_P_NODE_35439_length_374_cov_1.521595_g33745_i0 PRJNA407886 35439 374 1.521595 5.6907653 Capillovirus mali 28347 Viruses Viruses 213 1.54e-50   NTclustered gi|1249614036|dbj|LC184612.1| 28347 g33745 i0 81.467 3.68181818181818 259 48 69 0 2 260 2828 3086 Apple stem grooving virus genomic RNA, complete genome, isolate: Nagami blastn 1377 213 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
23369411 23369411 PRJNA407886_P_NODE_39779_length_348_cov_1.010909_g38085_i0 PRJNA407886 39779 348 1.010909 3.51796332 Capillovirus mali 28347 Viruses Viruses 368 2.88e-97   NTclustered gi|939193295|gb|KR185346.1| 28347 g38085 i0 96.413 20.8563218390805 223 8 64 0 126 348 1230 1008 Capillovirus mali isolate Cuiguan, complete genome blastn 7258 368 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
23369690 23369690 PRJNA407886_P_NODE_53379_length_293_cov_1.700000_g51685_i0 PRJNA407886 53379 293 1.7 4.981 Potyvirus phaseovulgaris 3240595 Viruses Viruses 542 1.32e-149   NTclustered gi|1935608368|gb|MN786956.1| 12196 g51685 i0 100 99.5870307167235 293 0 100 0 1 293 8054 7762 Bean common mosaic virus isolate SY-Peanut polyprotein gene, complete cds blastn 29179 542 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus phaseovulgaris
23370198 23370198 PRJNA407886_P_NODE_77679_length_244_cov_1.350877_g75985_i0 PRJNA407886 77679 244 1.350877 3.29613988 Capillovirus mali 28347 Viruses Viruses 340 4.189999999999999e-89   NTclustered gi|939193295|gb|KR185346.1| 28347 g75985 i0 92.437 1.95081967213115 238 18 98 0 7 244 2461 2224 Capillovirus mali isolate Cuiguan, complete genome blastn 476 340 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali
23370350 23370350 PRJNA407886_P_NODE_9519_length_1019_cov_2.165962_g8306_i0 PRJNA407886 9519 1019 2.165962 22.07115278 Capillovirus mali 28347 Viruses Viruses 1448 0   NTclustered gi|939193295|gb|KR185346.1| 28347 g8306 i0 92.338 99.7939156035329 1018 78 99 0 2 1019 5174 4157 Capillovirus mali isolate Cuiguan, complete genome blastn 101690 1448 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Capillovirus Capillovirus mali

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;