RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407886 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
417772 417772 PRJNA407886_P_NODE_61101_length_271_cov_1.828283_g59407_i0 PRJNA407886 61101 271 1.828283 4.95464693 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 455 1.6200000000000002e-123   NTclustered gi|68479954|gb|DQ076149.1| 6182 g59407 i0 97.048 1 271 7 100 1 1 271 449 180 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 271 455 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
15720128 15720128 PRJNA407886_P_NODE_44413_length_326_cov_1.217391_g42719_i0 PRJNA407886 44413 326 1.217391 3.96869466 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 67.6 1.09e-6   NTclustered gi|46849991|gb|AY594257.1| 6182 g42719 i0 95.238 0.355828220858896 42 2 13 0 1 42 635 676 Schistosoma japonicum MAP kinase mRNA, complete cds blastn 116 67.6 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
20818837 20818837 PRJNA407886_P_NODE_32077_length_399_cov_2.576687_g30383_i0 PRJNA407886 32077 399 2.576687 10.28098113 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 486 8.84e-133   NTclustered gi|68479954|gb|DQ076149.1| 6182 g30383 i0 88.722 1 399 43 99 2 2 399 428 31 Schistosoma japonicum clone 1XA1 unknown mRNA blastn 399 486 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;