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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA407886 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2967695 2967695 PRJNA407886_P_NODE_19883_length_573_cov_3.046000_g18201_i0 PRJNA407886 19883 573 3.046 17.45358 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.62e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g18201 i0 80.533 59.0366492146597 375 65 64 4 191 558 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
2968640 2968640 PRJNA407886_P_NODE_66663_length_258_cov_1.151351_g64969_i0 PRJNA407886 66663 258 1.151351 2.97048558 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 193 1.33e-44   NTclustered gi|813198223|ref|XM_012353305.1| 695850 g64969 i0 86.364 7.52325581395349 176 24 68 0 3 178 488 663 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 1941 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
8071106 8071106 PRJNA407886_P_NODE_61767_length_270_cov_1.142132_g60073_i0 PRJNA407886 61767 270 1.142132 3.0837564 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 176 1.41e-39   NTclustered gi|195970350|gb|EU880228.1| 67593 g60073 i0 84.659 12.9666666666667 176 27 65 0 85 260 449 274 Phytophthora sojae calmodulin (CAM1) mRNA, complete cds blastn 3501 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
8734988 8734988 PRJNA407886_P_NODE_39147_length_351_cov_1.571942_g37453_i0 PRJNA407886 39147 351 1.571942 5.51751642 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 228 5.129999999999999e-55   NTclustered gi|2795037587|ref|XM_067935188.1| 4785 g37453 i0 79.697 12.1367521367521 330 55 92 9 7 330 330 7 Phytophthora cinnamomi 60S ribosomal protein L5 (IUM83_10672), partial mRNA blastn 4260 228 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
11896236 11896236 PRJNA407886_P_NODE_41850_length_337_cov_1.556818_g40156_i0 PRJNA407886 41850 337 1.556818 5.24647666 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 313 1.32e-80   NTclustered gi|675185100|ref|XM_008903187.1| 761204 g40156 i0 83.383 96.4124629080119 337 56 100 0 1 337 1357 1693 Phytophthora parasitica INRA-310 luminal-binding protein mRNA blastn 32491 313 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
13170725 13170725 PRJNA407886_P_NODE_20911_length_550_cov_4.192872_g19225_i0 PRJNA407886 20911 550 4.192872 23.060796 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 243 2.99e-59   NTclustered gi|673019759|ref|XM_008865619.1| 157072 g19225 i0 79.05 14.4090909090909 358 71 65 4 104 459 482 127 Aphanomyces invadans 40S ribosomal protein S23 mRNA blastn 7925 243 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
18269062 18269062 PRJNA407886_P_NODE_45235_length_322_cov_3.594378_g43541_i0 PRJNA407886 45235 322 3.594378 11.57389716 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 215 3.64e-51   NTclustered gi|675165742|ref|XM_008893508.1| 761204 g43541 i0 78.947 41.0093167701863 323 62 99 6 2 321 1657 1338 Phytophthora parasitica INRA-310 translation elongation factor aEF-2 mRNA blastn 13205 215 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
19543152 19543152 PRJNA407886_P_NODE_40396_length_344_cov_3.051661_g38702_i0 PRJNA407886 40396 344 3.051661 10.49771384 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 292 1.7599999999999997e-74   NTclustered gi|669151349|ref|XM_008613015.1| 1156394 g38702 i0 82.029 23.625 345 60 100 2 1 344 1158 1501 Saprolegnia diclina VS20 adenosylhomocysteinase mRNA blastn 8127 292 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
20819018 20819018 PRJNA407886_P_NODE_41417_length_339_cov_1.590226_g39723_i0 PRJNA407886 41417 339 1.590226 5.39086614 Plectospira myriandra 100863 SAR_Eukaryotes SAR_Eukaryotes 287 8.06e-73   NTclustered gi|57903345|gb|AY729823.1| 100863 g39723 i0 82.143 54.6430678466077 336 58 99 2 2 336 514 848 Plectospira myriandra beta-tubulin gene, partial cds blastn 18524 287 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Plectospira Plectospira myriandra
20819268 20819268 PRJNA407886_P_NODE_52737_length_295_cov_1.387387_g51043_i0 PRJNA407886 52737 295 1.387387 4.09279165 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 180 1.2e-40   NTclustered gi|2795017327|ref|XM_067936784.1| 4785 g51043 i0 79.842 4.66440677966102 253 45 85 6 46 295 947 1196 Phytophthora cinnamomi Dihydrolipoyl dehydrogenase (IUM83_12177), partial mRNA blastn 1376 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
23369076 23369076 PRJNA407886_P_NODE_22479_length_519_cov_4.394619_g20791_i0 PRJNA407886 22479 519 4.394619 22.80807261 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 268 4.639999999999999e-67   NTclustered gi|698822976|ref|XM_009846215.1| 112090 g20791 i0 83.505 59.0481695568401 291 45 56 3 91 380 527 239 Aphanomyces astaci 40S ribosomal protein S13 mRNA blastn 30646 268 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
24033604 24033604 PRJNA407886_P_NODE_19459_length_583_cov_1.192157_g17780_i0 PRJNA407886 19459 583 1.192157 6.95027531 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 429 2.28e-115   NTclustered gi|2689409129|gb|OR569882.1| 4793 g17780 i0 80.589 98.9605488850772 577 95 97 11 1 567 27 596 Phytophthora citrophthora isolate JP1384 heat shock protein 90 (hsp90) gene, partial cds blastn 57694 429 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;