contig_metadata
13 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Nematoda"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1692290 | 1692290 | PRJNA407886_P_NODE_43622_length_329_cov_1.742188_g41928_i0 | PRJNA407886 | 43622 | 329 | 1.742188 | 5.73179852 | Necator americanus | 51031 | Nematoda | Nematoda | 56.5 | 0.002 | NTclustered | gi|2707563449|ref|XM_064188705.1| | 51031 | g41928 | i0 | 96.97 | 0.100303951367781 | 33 | 1 | 10 | 0 | 258 | 290 | 419 | 451 | Necator americanus uncharacterized protein (RB195_020420), partial mRNA | blastn | 33 | 56.5 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Ancylostomatidae | Necator | Necator americanus | |
| 2357229 | 2357229 | PRJNA407886_P_NODE_12002_length_859_cov_3.796438_g10581_i0 | PRJNA407886 | 12002 | 859 | 3.796438 | 32.61140242 | Mansonella | 42230 | Nematoda | Nematoda | 252 | 7.95e-62 | NTclustered | gi|1757078395|gb|MN432520.1| | 42231 | g10581 | i0 | 76.108 | 39.4062863795111 | 519 | 102 | 58 | 17 | 106 | 605 | 4183 | 4698 | Mansonella perstans 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence | blastn | 33850 | 254 | 0.992125984251969 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Onchocercidae | Mansonella | Mansonella perstans | |
| 8070288 | 8070288 | PRJNA407886_P_NODE_22867_length_513_cov_1.538636_g21177_i0 | PRJNA407886 | 22867 | 513 | 1.538636 | 7.89320268 | Caenorhabditis briggsae | 6238 | Nematoda | Nematoda | 335 | 4.45e-87 | NTclustered | gi|268537031|ref|XM_002633606.1| | 6238 | g21177 | i0 | 83.242 | 69.9395711500975 | 364 | 61 | 71 | 0 | 84 | 447 | 418 | 55 | Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA | blastn | 35879 | 335 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis briggsae | |
| 8070890 | 8070890 | PRJNA407886_P_NODE_51327_length_299_cov_3.721239_g49633_i0 | PRJNA407886 | 51327 | 299 | 3.721239 | 11.12650461 | Tylopharynx sp. WEM-2009 | 669147 | Nematoda | Nematoda | 80.5 | 1.28e-10 | NTclustered | gi|256709166|gb|GQ422235.1| | 669147 | g49633 | i0 | 76.101 | 0.531772575250836 | 159 | 34 | 53 | 4 | 38 | 194 | 1 | 157 | Tylopharynx sp. WEM-2009 large subunit ribosomal protein 29 (rpl-29) pseudogene mRNA, complete sequence | blastn | 159 | 80.5 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Tylopharyngidae | Tylopharynx | Tylopharynx sp. WEM-2009 | |
| 13170825 | 13170825 | PRJNA407886_P_NODE_25011_length_479_cov_1.423645_g23320_i0 | PRJNA407886 | 25011 | 479 | 1.423645 | 6.81925955 | Caenorhabditis briggsae | 6238 | Nematoda | Nematoda | 350 | 1.4800000000000002e-91 | NTclustered | gi|268559799|ref|XM_002646027.1| | 6238 | g23320 | i0 | 85.337 | 72.0584551148226 | 341 | 46 | 71 | 4 | 141 | 479 | 1307 | 969 | Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA | blastn | 34516 | 350 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis briggsae | |
| 13171042 | 13171042 | PRJNA407886_P_NODE_35651_length_372_cov_4.792642_g33957_i0 | PRJNA407886 | 35651 | 372 | 4.792642 | 17.82862824 | Pristionchus pauli | 376545 | Nematoda | Nematoda | 217 | 1.19e-51 | NTclustered | gi|150982019|gb|EF634598.1| | 376545 | g33957 | i0 | 79.739 | 4.40860215053763 | 306 | 56 | 81 | 6 | 1 | 303 | 339 | 37 | Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds | blastn | 1640 | 217 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Neodiplogasteridae | Pristionchus | Pristionchus pauli | |
| 13171481 | 13171481 | PRJNA407886_P_NODE_59151_length_276_cov_2.704433_g57457_i0 | PRJNA407886 | 59151 | 276 | 2.704433 | 7.46423508 | Pristionchus bucculentus | 1317126 | Nematoda | Nematoda | 219 | 2.3599999999999993e-52 | NTclustered | gi|479330856|gb|KC463849.1| | 1317126 | g57457 | i0 | 88.043 | 29.5072463768116 | 184 | 22 | 67 | 0 | 10 | 193 | 206 | 23 | Pristionchus bucculentus strain RS5596 small subunit ribosomal protein 14 (rps14) gene, partial cds | blastn | 8144 | 219 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Neodiplogasteridae | Pristionchus | Pristionchus bucculentus | |
| 13171596 | 13171596 | PRJNA407886_P_NODE_64431_length_263_cov_1.278947_g62737_i0 | PRJNA407886 | 64431 | 263 | 1.278947 | 3.36363061 | Caenorhabditis remanei | 31234 | Nematoda | Nematoda | 159 | 1.38e-34 | NTclustered | gi|2445373096|ref|XM_003088415.2| | 31234 | g62737 | i0 | 78.277 | 64.0114068441065 | 267 | 44 | 99 | 11 | 2 | 261 | 359 | 100 | Caenorhabditis remanei uncharacterized protein (GCK72_013918), partial mRNA | blastn | 16835 | 159 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis remanei | |
| 15720705 | 15720705 | PRJNA407886_P_NODE_71973_length_249_cov_0.875000_g70279_i0 | PRJNA407886 | 71973 | 249 | 0.875 | 2.17875 | Levipalatum texanum | 1486449 | Nematoda | Nematoda | 119 | 2.19e-22 | NTclustered | gi|610559467|gb|KJ395558.1| | 1486449 | g70279 | i0 | 79.532 | 42.2048192771084 | 171 | 31 | 68 | 4 | 1 | 169 | 205 | 37 | Levipalatum texanum ribosomal protein (rpl-23) gene, partial cds | blastn | 10509 | 119 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Diplogasteridae | Levipalatum | Levipalatum texanum | |
| 15720915 | 15720915 | PRJNA407886_P_NODE_83153_length_232_cov_2.817610_g81459_i0 | PRJNA407886 | 83153 | 232 | 2.81761 | 6.5368552 | Caenorhabditis briggsae | 6238 | Nematoda | Nematoda | 100 | 7.3e-17 | NTclustered | gi|268574577|ref|XM_002642222.1| | 6238 | g81459 | i0 | 91.667 | 11.7887931034483 | 72 | 6 | 31 | 0 | 2 | 73 | 1057 | 1128 | Caenorhabditis briggsae Protein CBR-ACT-5 (Cbr-act-5), partial mRNA | blastn | 2735 | 100 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis briggsae | |
| 16995045 | 16995045 | PRJNA407886_P_NODE_48774_length_309_cov_1.127119_g47080_i0 | PRJNA407886 | 48774 | 309 | 1.127119 | 3.48279771 | Meloidogyne hapla | 6305 | Nematoda | Nematoda | 100 | 1.02e-16 | NTclustered | gi|766695936|gb|KM887149.1| | 6305 | g47080 | i0 | 81.395 | 24.2038834951456 | 129 | 18 | 41 | 6 | 12 | 137 | 450 | 325 | Meloidogyne hapla isolate HO1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial | blastn | 7479 | 100 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Meloidogynidae | Meloidogyne | Meloidogyne hapla | |
| 16995085 | 16995085 | PRJNA407886_P_NODE_51034_length_300_cov_3.017621_g49340_i0 | PRJNA407886 | 51034 | 300 | 3.017621 | 9.052863 | Caenorhabditis remanei | 31234 | Nematoda | Nematoda | 115 | 3.51e-21 | NTclustered | gi|71835908|gb|DQ115333.1| | 31234 | g49340 | i0 | 76.606 | 9.57666666666667 | 218 | 45 | 71 | 5 | 69 | 282 | 478 | 263 | Caenorhabditis remanei ubiquitin protein 1 (ubq-1) mRNA, partial cds | blastn | 2873 | 115 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Rhabditidae | Caenorhabditis | Caenorhabditis remanei | |
| 18269364 | 18269364 | PRJNA407886_P_NODE_59475_length_275_cov_5.074257_g57781_i0 | PRJNA407886 | 59475 | 275 | 5.074257 | 13.95420675 | Diplogastrellus gracilis | 669117 | Nematoda | Nematoda | 183 | 8.59e-42 | NTclustered | gi|256709130|gb|GQ422217.1| | 669117 | g57781 | i0 | 83.333 | 12.3672727272727 | 204 | 28 | 73 | 5 | 71 | 271 | 465 | 665 | Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds | blastn | 3401 | 183 | 1 | Eukaryota | Opisthokonta | Metazoa | Nematoda | Chromadorea | Rhabditida | Diplogasteridae | Diplogastrellus | Diplogastrellus gracilis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;