RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA407886 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2968135 2968135 PRJNA407886_P_NODE_41823_length_337_cov_1.742424_g40129_i0 PRJNA407886 41823 337 1.742424 5.87196888 Heterostelium album 2086695 Evosea other_Eukaryota 222 2.29e-53   NTclustered gi|1160557950|ref|XM_020575808.1| 670386 g40129 i0 89.655 61.1008902077151 174 18 52 0 146 319 1332 1159 Polysphondylium pallidum PN500 ubiquitin (ubqI), partial mRNA blastn 20591 222 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
2968285 2968285 PRJNA407886_P_NODE_49443_length_306_cov_1.789700_g47749_i0 PRJNA407886 49443 306 1.7897 5.476482 Dictyostelium discoideum 44689 Evosea other_Eukaryota 56.5 0.002   NTclustered gi|66803509|ref|XM_630506.1| 352472 g47749 i0 97.059 0.111111111111111 34 0 11 1 146 178 47 14 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0290691) mRNA, complete cds blastn 34 56.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
8071423 8071423 PRJNA407886_P_NODE_78307_length_244_cov_0.900585_g76613_i0 PRJNA407886 78307 244 0.900585 2.1974274 Acytostelium subglobosum 361139 Evosea other_Eukaryota 62.1 3.66e-5   NTclustered gi|831771740|ref|XM_012897941.1| 1410327 g76613 i0 93.023 0.290983606557377 43 2 18 1 139 181 36 77 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 71 62.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
9346192 9346192 PRJNA407886_P_NODE_75828_length_246_cov_0.890173_g74134_i0 PRJNA407886 75828 246 0.890173 2.18982558 Cavenderia medusoides 361117 Evosea other_Eukaryota 191 4.51e-44   NTclustered gi|169930320|gb|EU360785.1| 361117 g74134 i0 81.328 44.4308943089431 241 40 97 5 2 240 553 790 Cavenderia medusoides isolate OH592 elongation factor 1 alpha gene, partial cds blastn 10930 191 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia medusoides
10621163 10621163 PRJNA407886_P_NODE_33449_length_388_cov_2.596825_g31755_i0 PRJNA407886 33449 388 2.596825 10.075681 Dictyostelium purpureum 5786 Evosea other_Eukaryota 235 3.43e-57   NTclustered gi|330845446|ref|XM_003294549.1| 5786 g31755 i0 80.435 4.53865979381443 322 51 81 8 6 321 223 538 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_93248), mRNA blastn 1761 235 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
16995481 16995481 PRJNA407886_P_NODE_71294_length_250_cov_0.870056_g69600_i0 PRJNA407886 71294 250 0.870056 2.17514 Acytostelium subglobosum 361139 Evosea other_Eukaryota 143 1.31e-29   NTclustered gi|831771575|ref|XM_012897889.1| 1410327 g69600 i0 77.5 59.704 240 52 96 2 10 248 401 163 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 14926 143 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
20819540 20819540 PRJNA407886_P_NODE_65577_length_260_cov_1.647059_g63883_i0 PRJNA407886 65577 260 1.647059 4.2823534 Acytostelium subglobosum 361139 Evosea other_Eukaryota 95.3 3.88e-15   NTclustered gi|831761070|ref|XM_012894692.1| 1410327 g63883 i0 87.654 3.4 81 10 31 0 177 257 319 399 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 884 95.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;