RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA407886 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1692621 1692621 PRJNA407886_P_NODE_59542_length_275_cov_2.202970_g57848_i0 PRJNA407886 59542 275 2.20297 6.0581675 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 248 3e-61   NTclustered gi|470525569|ref|XM_004356569.1| 1257118 g57848 i0 83.395 1.78545454545455 271 41 98 4 7 275 760 492 Acanthamoeba castellanii str. Neff mitochondrial phosphate transporter, putative (ACA1_173800), partial mRNA blastn 491 248 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4244015 4244015 PRJNA407886_P_NODE_19604_length_579_cov_22.689723_g17923_i0 PRJNA407886 19604 579 22.689723 131.37349617 Ripella platypodia 2047821 Discosea other_Eukaryota 913 0   NTclustered gi|1269228359|gb|MF683484.1| 2047821 g17923 i0 95.197 100.697754749568 583 18 100 7 1 579 1072 1648 Ripella platypodia clone 23.4.34 18S ribosomal RNA gene, partial sequence blastn 58304 913 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella platypodia
11897142 11897142 PRJNA407886_P_NODE_9570_length_1015_cov_22.805732_g8350_i0 PRJNA407886 9570 1015 22.805732 231.4781798 Ripella sp. 805 1217113 Discosea other_Eukaryota 878 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g8350 i0 95.332 55.1655172413793 557 18 54 6 2 554 553 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55993 878 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
20819419 20819419 PRJNA407886_P_NODE_60017_length_274_cov_1.532338_g58323_i0 PRJNA407886 60017 274 1.532338 4.19860612 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 56.5 0.002   NTclustered gi|470482349|ref|XM_004342971.1| 1257118 g58323 i0 100 0.109489051094891 30 0 11 0 191 220 480 451 Acanthamoeba castellanii str. Neff cathepsin L, putative (ACA1_317670), partial mRNA blastn 30 56.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24644208 24644208 PRJNA407886_P_NODE_63940_length_264_cov_1.602094_g62246_i0 PRJNA407886 63940 264 1.602094 4.22952816 Platyamoeba placida 3454475 Discosea other_Eukaryota 333 7.689999999999999e-87   NTclustered gi|33946348|gb|AY294153.1| 197527 g62246 i0 89.394 95.5037878787879 264 28 100 0 1 264 870 607 Platyamoeba placida actin mRNA, partial cds blastn 25213 333 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba placida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;