RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407886 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
417968 417968 PRJNA407886_P_NODE_71581_length_249_cov_2.295455_g69887_i0 PRJNA407886 71581 249 2.295455 5.71568295 Parvicapsula minibicornis 109801 Cnidaria other_Eukaryota 130 1.01e-25   NTclustered gi|605060084|gb|KF874224.1| 109801 g69887 i0 87.069 48.3534136546185 116 13 47 2 1 116 346 233 Parvicapsula minibicornis 28S ribosomal RNA gene, partial sequence blastn 12040 130 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Parvicapsulidae Parvicapsula Parvicapsula minibicornis
15110288 15110288 PRJNA407886_P_NODE_71992_length_249_cov_0.875000_g70298_i0 PRJNA407886 71992 249 0.875 2.17875 Metazoa 33208 Cnidaria other_Eukaryota 62.1 3.74e-5   NTclustered gi|2663986577|emb|OY756918.1| 59785 g70298 i0 95 13.6666666666667 40 0 15 1 184 221 4698 4659 Myxobolus squamalis isolate 71B08 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA complete sequences blastn 3403 62.1 1 Eukaryota Opisthokonta Metazoa Cnidaria Myxozoa Bivalvulida Myxobolidae Myxobolus Myxobolus squamalis
15719950 15719950 PRJNA407886_P_NODE_35093_length_376_cov_2.141914_g33399_i0 PRJNA407886 35093 376 2.141914 8.05359664 Eunicella cavolini 317547 Cnidaria other_Eukaryota 54.7 0.01   NTclustered gi|2918369540|emb|OZ237722.1| 317547 g33399 i0 100 0.0771276595744681 29 0 8 0 252 280 5240126 5240154 Eunicella cavolini genome assembly, chromosome: 6 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Malacalcyonacea Eunicellidae Eunicella Eunicella cavolini
19542646 19542646 PRJNA407886_P_NODE_16116_length_678_cov_2.945455_g14473_i0 PRJNA407886 16116 678 2.945455 19.9701849 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 388 4.54e-103   NTclustered gi|2782937125|ref|XM_067075198.1| 252671 g14473 i0 78.583 33.0280235988201 593 123 87 4 24 614 1538 948 PREDICTED: Clytia hemisphaerica ATP synthase subunit alpha, mitochondrial-like (LOC136819035), mRNA blastn 22393 388 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica
19543856 19543856 PRJNA407886_P_NODE_75496_length_246_cov_0.890173_g73802_i0 PRJNA407886 75496 246 0.890173 2.18982558 Anemonia sulcata 6108 Cnidaria other_Eukaryota 58.4 4.78e-4   NTclustered gi|2917940744|emb|OZ237568.1| 6108 g73802 i0 92.857 0.426829268292683 42 0 16 3 46 85 2966624 2966664 Anemonia sulcata genome assembly, chromosome: 14 blastn 105 58.4 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
23369506 23369506 PRJNA407886_P_NODE_45019_length_323_cov_2.004000_g43325_i0 PRJNA407886 45019 323 2.004 6.47292 Clytia hemisphaerica 252671 Cnidaria other_Eukaryota 250 1e-61   NTclustered gi|2782857601|ref|XM_067058150.1| 252671 g43325 i0 85.654 65.2198142414861 237 34 73 0 87 323 88 324 PREDICTED: Clytia hemisphaerica actin, non-muscle 6.2-like (LOC136801512), mRNA blastn 21066 250 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Leptothecata Clytiidae Clytia Clytia hemisphaerica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;