RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407886 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1692262 1692262 PRJNA407886_P_NODE_41922_length_337_cov_1.102273_g40228_i0 PRJNA407886 41922 337 1.102273 3.71466001 Phototrophicaceae bacterium 3069543 Bacteria Bacteria 52.8 0.032   NTclustered gi|2893358443|emb|OZ220735.1| 3069543 g40228 i0 100 0.0830860534124629 28 0 8 0 159 186 2226432 2226459 MAG: Phototrophicaceae bacterium isolate 252cb3c6-93c9-4785-98a9-44529c25b936 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae   Phototrophicaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;