contig_metadata
21 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1082611 | 1082611 | PRJNA407886_P_NODE_77321_length_244_cov_3.514620_g75627_i0 | PRJNA407886 | 77321 | 244 | 3.51462 | 8.5756728 | Lentilactobacillus | 2767893 | Bacteria | Bacteria | 52.8 | 0.022 | NTclustered | gi|2438966276|gb|CP110846.1| | 1581 | g75627 | i0 | 100 | 0.688524590163934 | 28 | 0 | 11 | 0 | 129 | 156 | 2114477 | 2114504 | Lentilactobacillus buchneri strain Egmn17 chromosome | blastn | 168 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lentilactobacillus | Lentilactobacillus buchneri | ||
| 2968897 | 2968897 | PRJNA407886_P_NODE_79463_length_243_cov_0.905882_g77769_i0 | PRJNA407886 | 79463 | 243 | 0.905882 | 2.20129326 | [Ruminococcus] torques | 33039 | Bacteria | Bacteria | 444 | 3.09e-120 | NTclustered | gi|291548560|emb|FP929055.1| | 657313 | g77769 | i0 | 99.588 | 2 | 243 | 1 | 100 | 0 | 1 | 243 | 796390 | 796632 | Ruminococcus torques L2-14 draft genome | blastn | 486 | 444 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Mediterraneibacter | [Ruminococcus] torques | ||
| 3633461 | 3633461 | PRJNA407886_P_NODE_74763_length_247_cov_0.885057_g73069_i0 | PRJNA407886 | 74763 | 247 | 0.885057 | 2.18609079 | Streptococcus | 1301 | Bacteria | Bacteria | 448 | 2.4399999999999993e-121 | NTclustered | gi|2179901676|gb|CP046524.1| | 1303 | g73069 | i0 | 100 | 97.9797570850202 | 242 | 0 | 98 | 0 | 6 | 247 | 1378005 | 1378246 | Streptococcus oralis strain SOT chromosome, complete genome | blastn | 24201 | 448 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus oralis | ||
| 8071402 | 8071402 | PRJNA407886_P_NODE_77247_length_245_cov_0.895349_g75553_i0 | PRJNA407886 | 77247 | 245 | 0.895349 | 2.19360505 | Lactobacillus crispatus | 47770 | Bacteria | Bacteria | 453 | 5.1900000000000006e-123 | NTclustered | gi|1543693276|gb|CP026503.1| | 47770 | g75553 | i0 | 100 | 413.020408163265 | 245 | 0 | 100 | 0 | 1 | 245 | 77433 | 77189 | Lactobacillus crispatus strain AB70 chromosome, complete genome | blastn | 101190 | 453 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Lactobacillus crispatus | ||
| 8734831 | 8734831 | PRJNA407886_P_NODE_27127_length_449_cov_2.244681_g25434_i0 | PRJNA407886 | 27127 | 449 | 2.244681 | 10.07861769 | Gemella | 1378 | Bacteria | Bacteria | 819 | 0 | NTclustered | gi|1540173839|emb|LR134484.1| | 1379 | g25434 | i0 | 99.555 | 833.69710467706 | 449 | 2 | 100 | 0 | 1 | 449 | 10536 | 10088 | Gemella haemolysans strain NCTC10459 genome assembly, chromosome: 1 | blastn | 374330 | 819 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Gemellaceae | Gemella | Gemella haemolysans | ||
| 8735361 | 8735361 | PRJNA407886_P_NODE_70247_length_251_cov_0.865169_g68553_i0 | PRJNA407886 | 70247 | 251 | 0.865169 | 2.17157419 | Staphylococcus | 1279 | Bacteria | Bacteria | 60.2 | 1.36e-4 | NTclustered | gi|1844054309|gb|CP053477.1| | 1292 | g68553 | i0 | 100 | 0.382470119521912 | 32 | 0 | 13 | 0 | 70 | 101 | 1300853 | 1300822 | Staphylococcus warneri strain WB224 chromosome, complete genome | blastn | 96 | 60.2 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus warneri | ||
| 9346166 | 9346166 | PRJNA407886_P_NODE_74588_length_247_cov_0.885057_g72894_i0 | PRJNA407886 | 74588 | 247 | 0.885057 | 2.18609079 | Staphylococcus hominis | 1290 | Bacteria | Bacteria | 451 | 1.88e-122 | NTclustered | gi|2669659999|gb|CP090011.1| | 1290 | g72894 | i0 | 99.595 | 25.9676113360324 | 247 | 1 | 100 | 0 | 1 | 247 | 976597 | 976351 | Staphylococcus hominis strain acrlg chromosome, complete genome | blastn | 6414 | 451 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus hominis | ||
| 10010541 | 10010541 | PRJNA407886_P_NODE_64128_length_263_cov_3.926316_g62434_i0 | PRJNA407886 | 64128 | 263 | 3.926316 | 10.32621108 | Staphylococcus | 1279 | Bacteria | Bacteria | 481 | 2.58e-131 | NTclustered | gi|2521904872|gb|CP127705.1| | 1280 | g62434 | i0 | 99.62 | 551.368821292776 | 263 | 1 | 100 | 0 | 1 | 263 | 2019987 | 2019725 | Staphylococcus aureus strain C351 chromosome, complete genome | blastn | 145010 | 481 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus aureus | ||
| 11285805 | 11285805 | PRJNA407886_P_NODE_66129_length_259_cov_1.387097_g64435_i0 | PRJNA407886 | 66129 | 259 | 1.387097 | 3.59258123 | Peptostreptococcales | 3082720 | Bacteria | Bacteria | 241 | 4.690000000000001e-59 | NTclustered | gi|2513816600|gb|CP126462.1| | 166485 | g64435 | i0 | 85.02 | 441.737451737452 | 247 | 26 | 96 | 10 | 12 | 253 | 484759 | 484999 | Caminicella sporogenes strain HV-G chromosome, complete genome | blastn | 114410 | 241 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Peptostreptococcales | Caminicellaceae | Caminicella | Caminicella sporogenes | ||
| 11896800 | 11896800 | PRJNA407886_P_NODE_67970_length_255_cov_1.142857_g66276_i0 | PRJNA407886 | 67970 | 255 | 1.142857 | 2.91428535 | Leuconostoc carnosum | 1252 | Bacteria | Bacteria | 134 | 8.040000000000001e-27 | NTclustered | gi|1721181998|gb|CP042376.1| | 1252 | g66276 | i0 | 77.007 | 19.6274509803922 | 274 | 37 | 100 | 12 | 1 | 255 | 6135 | 5869 | Leuconostoc carnosum strain CBA3620 plasmid unnamed2, complete sequence | blastn | 5005 | 134 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Leuconostoc | Leuconostoc carnosum | ||
| 13171647 | 13171647 | PRJNA407886_P_NODE_66771_length_257_cov_2.282609_g65077_i0 | PRJNA407886 | 66771 | 257 | 2.282609 | 5.86630513 | Staphylococcus epidermidis | 1282 | Bacteria | Bacteria | 470 | 5.45e-128 | NTclustered | gi|2489625674|gb|CP121231.1| | 1282 | g65077 | i0 | 99.611 | 100 | 257 | 1 | 100 | 0 | 1 | 257 | 1710427 | 1710683 | Staphylococcus epidermidis strain 9 chromosome | blastn | 25700 | 470 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 13835721 | 13835721 | PRJNA407886_P_NODE_46051_length_319_cov_1.650407_g44357_i0 | PRJNA407886 | 46051 | 319 | 1.650407 | 5.26479833 | Companilactobacillus | 2767879 | Bacteria | Bacteria | 52.8 | 0.03 | NTclustered | gi|2781060683|gb|CP162899.1| | 1612 | g44357 | i0 | 100 | 0.526645768025078 | 28 | 0 | 9 | 0 | 94 | 121 | 2060484 | 2060457 | Companilactobacillus farciminis strain YLR-1 chromosome, complete genome | blastn | 168 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Companilactobacillus | Companilactobacillus farciminis | ||
| 14446878 | 14446878 | PRJNA407886_P_NODE_69972_length_251_cov_0.865169_g68278_i0 | PRJNA407886 | 69972 | 251 | 0.865169 | 2.17157419 | Staphylococcus hominis | 1290 | Bacteria | Bacteria | 464 | 2.47e-126 | NTclustered | gi|2669659999|gb|CP090011.1| | 1290 | g68278 | i0 | 100 | 26.1195219123506 | 251 | 0 | 100 | 0 | 1 | 251 | 985327 | 985077 | Staphylococcus hominis strain acrlg chromosome, complete genome | blastn | 6556 | 464 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus hominis | ||
| 15720732 | 15720732 | PRJNA407886_P_NODE_73593_length_248_cov_0.880000_g71899_i0 | PRJNA407886 | 73593 | 248 | 0.88 | 2.1824 | Lactobacillus crispatus | 47770 | Bacteria | Bacteria | 453 | 5.2600000000000005e-123 | NTclustered | gi|2096299657|gb|CP083392.1| | 47770 | g71899 | i0 | 99.597 | 68.4556451612903 | 248 | 1 | 100 | 0 | 1 | 248 | 477043 | 477290 | Lactobacillus crispatus strain Lc1226 chromosome, complete genome | blastn | 16977 | 453 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Lactobacillus crispatus | ||
| 16995118 | 16995118 | PRJNA407886_P_NODE_52514_length_296_cov_1.197309_g50820_i0 | PRJNA407886 | 52514 | 296 | 1.197309 | 3.54403464 | Peptostreptococcaceae bacterium oral taxon E45 | 713027 | Bacteria | Bacteria | 536 | 6.2199999999999986e-148 | NTclustered | gi|285205304|gb|GU431233.1| | 713027 | g50820 | i0 | 99.324 | 107.993243243243 | 296 | 2 | 100 | 0 | 1 | 296 | 298 | 3 | Peptostreptococcaceae bacterium oral taxon E45 clone JS010 16S ribosomal RNA gene, partial sequence | blastn | 31966 | 536 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Peptostreptococcales | Peptostreptococcaceae | Peptostreptococcaceae bacterium oral taxon E45 | |||
| 17659614 | 17659614 | PRJNA407886_P_NODE_30554_length_413_cov_1.267647_g28860_i0 | PRJNA407886 | 30554 | 413 | 1.267647 | 5.23538211 | Clostridium | 1485 | Bacteria | Bacteria | 54.7 | 0.011 | NTclustered | gi|1095307724|gb|CP013019.1| | 1501 | g28860 | i0 | 96.875 | 0.387409200968523 | 32 | 1 | 8 | 0 | 23 | 54 | 2219981 | 2219950 | Clostridium pasteurianum strain M150B chromosome, complete genome | blastn | 160 | 54.7 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Clostridium pasteurianum | ||
| 19543974 | 19543974 | PRJNA407886_P_NODE_81436_length_241_cov_0.916667_g79742_i0 | PRJNA407886 | 81436 | 241 | 0.916667 | 2.20916747 | Streptococcus parasuis | 1501662 | Bacteria | Bacteria | 228 | 3.3599999999999994e-55 | NTclustered | gi|2830875037|gb|CP170760.1| | 1501662 | g79742 | i0 | 99.213 | 52.356846473029 | 127 | 0 | 99 | 1 | 1 | 127 | 169658 | 169533 | Streptococcus parasuis strain FZ2 chromosome, complete genome | blastn | 12618 | 228 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus parasuis | ||
| 19543982 | 19543982 | PRJNA407886_P_NODE_81856_length_241_cov_0.916667_g80162_i0 | PRJNA407886 | 81856 | 241 | 0.916667 | 2.20916747 | Staphylococcus capitis | 29388 | Bacteria | Bacteria | 446 | 8.519999999999999e-121 | NTclustered | gi|2770657928|gb|CP145242.1| | 72758 | g80162 | i0 | 100 | 1.67219917012448 | 241 | 0 | 100 | 0 | 1 | 241 | 2238 | 1998 | Staphylococcus capitis subsp. capitis strain Sc1365673 plasmid pSc1365673_1, complete sequence | blastn | 403 | 446 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus capitis | ||
| 20819823 | 20819823 | PRJNA407886_P_NODE_78977_length_243_cov_0.905882_g77283_i0 | PRJNA407886 | 78977 | 243 | 0.905882 | 2.20129326 | Brevibacillus choshinensis | 54911 | Bacteria | Bacteria | 52.8 | 0.022 | NTclustered | gi|1976386733|gb|CP069127.1| | 54911 | g77283 | i0 | 100 | 0.11522633744856 | 28 | 0 | 12 | 0 | 216 | 243 | 4575907 | 4575880 | Brevibacillus choshinensis strain HPD31-SP3 chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Paenibacillaceae | Brevibacillus | Brevibacillus choshinensis | ||
| 24644255 | 24644255 | PRJNA407886_P_NODE_66180_length_259_cov_1.241935_g64486_i0 | PRJNA407886 | 66180 | 259 | 1.241935 | 3.21661165 | Chakrabartyella piscis | 2918914 | Bacteria | Bacteria | 52.8 | 0.024 | NTclustered | gi|2509460602|gb|CP092441.1| | 2918914 | g64486 | i0 | 100 | 0.108108108108108 | 28 | 0 | 11 | 0 | 232 | 259 | 610963 | 610936 | Chakrabartyella piscis strain BP5G chromosome, complete genome | blastn | 28 | 52.8 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Lachnospirales | Lachnospiraceae | Chakrabartyella | Chakrabartyella piscis | ||
| 24644332 | 24644332 | PRJNA407886_P_NODE_70260_length_251_cov_0.865169_g68566_i0 | PRJNA407886 | 70260 | 251 | 0.865169 | 2.17157419 | Staphylococcus hominis | 1290 | Bacteria | Bacteria | 464 | 2.47e-126 | NTclustered | gi|2663184963|gb|CP142855.1| | 1290 | g68566 | i0 | 100 | 31.6693227091633 | 251 | 0 | 100 | 0 | 1 | 251 | 671034 | 670784 | Staphylococcus hominis strain Sh8213 chromosome, complete genome | blastn | 7949 | 464 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus hominis |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;