RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA407886 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5521925 5521925 PRJNA407886_P_NODE_77185_length_245_cov_0.895349_g75491_i0 PRJNA407886 77185 245 0.895349 2.19360505 Eimeria magna 471282 SAR_Eukaryotes SAR_Eukaryotes 165 2.72e-36   NTclustered gi|2512998691|gb|OQ128328.1| 471282 g75491 i0 80.841 65.2897959183673 214 38 86 1 2 212 670 457 Eimeria magna isolate Chengdu glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA, complete cds blastn 15996 165 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria magna
9345415 9345415 PRJNA407886_P_NODE_34368_length_381_cov_5.019481_g32674_i0 PRJNA407886 34368 381 5.019481 19.12422261 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.01   NTclustered gi|915016413|ref|XM_013397464.1| 5801 g32674 i0 100 0.0761154855643045 29 0 8 0 16 44 392 420 Eimeria acervulina hypothetical protein, conserved partial mRNA blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
10621612 10621612 PRJNA407886_P_NODE_56629_length_283_cov_2.647619_g54935_i0 PRJNA407886 56629 283 2.647619 7.49276177 Theileria equi 5872 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|510902588|ref|XM_004829868.1| 1537102 g54935 i0 96.875 0.212014134275618 32 1 11 0 15 46 281 250 Theileria equi strain WA signal peptide-containing protein (BEWA_031120), partial mRNA blastn 60 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria equi
24644214 24644214 PRJNA407886_P_NODE_64240_length_263_cov_1.973684_g62546_i0 PRJNA407886 64240 263 1.973684 5.19078892 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 448 2.6199999999999995e-121   NTclustered gi|820695469|tpe|LN714488.1| 572307 g62546 i0 97.338 3.31178707224335 263 7 100 0 1 263 117664 117402 TPA_asm: Neospora caninum Liverpool, unplaced_1, complete genome blastn 871 448 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;