RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407886 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8070319 8070319 PRJNA407886_P_NODE_24387_length_488_cov_4.113253_g22696_i0 PRJNA407886 24387 488 4.113253 20.07267464 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 52.8 0.048   NTclustered gi|2893358444|emb|OZ220736.1| 2910147 g22696 i0 96.875 0.0655737704918033 32 0 7 1 267 298 4678644 4678614 MAG: Vicinamibacterales bacterium isolate e96e4bd8-36b5-4932-a7c8-d2011ef2eb69 genome assembly, chromosome: 1 blastn 32 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
18268827 18268827 PRJNA407886_P_NODE_33535_length_388_cov_0.965079_g31841_i0 PRJNA407886 33535 388 0.965079 3.74450652 Geothrix sp. 21YS21S-2 3068893 Bacteria Bacteria 52.8 0.037   NTclustered gi|2566094019|gb|CP132910.1| 3068893 g31841 i0 100 0.0721649484536082 28 0 7 0 83 110 3145768 3145741 Geothrix sp. 21YS21S-2 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Geothrix Geothrix sp. 21YS21S-2
18269552 18269552 PRJNA407886_P_NODE_67775_length_255_cov_1.692308_g66081_i0 PRJNA407886 67775 255 1.692308 4.3153854 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 62.1 3.85e-5   NTclustered gi|2874253744|emb|OY969603.1| 171953 g66081 i0 93.023 0.168627450980392 43 1 16 2 104 145 554410 554451 MAG: uncultured Acidobacteriota bacterium isolate MFD01476.bin.c.1 genome assembly, chromosome: 1 blastn 43 62.1 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;