RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA407886 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
417935 417935 PRJNA407886_P_NODE_69761_length_251_cov_0.865169_g68067_i0 PRJNA407886 69761 251 0.865169 2.17157419 Kosmotoga olearia 651457 Bacteria Bacteria 464 2.47e-126   NTclustered gi|239505242|gb|CP001634.1| 521045 g68067 i0 100 1.12350597609562 251 0 100 0 1 251 998687 998937 Kosmotoga olearia TBF 19.5.1, complete genome blastn 282 464 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Kosmotoga Kosmotoga olearia
4910565 4910565 PRJNA407886_P_NODE_72444_length_249_cov_0.875000_g70750_i0 PRJNA407886 72444 249 0.875 2.17875 Deinococcus 1298 Bacteria Bacteria 433 6.89e-117   NTclustered gi|1435316362|gb|CP031158.1| 980427 g70750 i0 98 303.903614457831 250 4 100 1 1 249 1791822 1792071 Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome blastn 75672 433 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
20208768 20208768 PRJNA407886_P_NODE_74696_length_247_cov_0.885057_g73002_i0 PRJNA407886 74696 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 457 4.05e-124   NTclustered gi|1073549716|gb|KX946495.1| 47478 g73002 i0 100 107.890688259109 247 0 100 0 1 247 493 739 Deinococcus sp. strain FX4 16S ribosomal RNA gene, partial sequence blastn 26649 457 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;