RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA407886" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA407886 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4244899 4244899 PRJNA407886_P_NODE_62324_length_268_cov_1.579487_g60630_i0 PRJNA407886 62324 268 1.579487 4.23302516 Halomontanus rarus 3034020 Archaea Archaea 52.8 0.025   NTclustered gi|2006565477|gb|CP071597.1| 3034020 g60630 i0 100 0.104477611940299 28 0 10 0 87 114 3576524 3576551 Halomontanus rarus strain KZCA124 chromosome 1, complete sequence blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halomontanus Halomontanus rarus
10620679 10620679 PRJNA407886_P_NODE_10829_length_927_cov_5.329040_g9493_i0 PRJNA407886 10829 927 5.32904 49.4002008 Halalkaliarchaeum desulfuricum 2055893 Archaea Archaea 63.9 4.33e-5   NTclustered gi|1338053427|gb|CP025066.1| 2055893 g9493 i0 78.448 0.461704422869471 116 12 12 7 633 742 336905 336797 Halalkaliarchaeum desulfuricum strain AArc-Sl chromosome, complete genome blastn 428 63.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halalkaliarchaeum Halalkaliarchaeum desulfuricum
20819718 20819718 PRJNA407886_P_NODE_73697_length_248_cov_0.880000_g72003_i0 PRJNA407886 73697 248 0.88 2.1824 Halorubrum salinarum 2739057 Archaea Archaea 52.8 0.022   NTclustered gi|1848526000|gb|CP053941.1| 2739057 g72003 i0 100 0.112903225806452 28 0 11 0 217 244 2671162 2671189 Halorubrum salinarum strain RHB-C chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum salinarum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;