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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA407368" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 24 ✖

bioproject 1

  • PRJNA407368 · 24 ✖

analysis 1

  • blastn · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
415027 415027 PRJNA407368_S_NODE_3681_length_305_cov_3.996377_g3579_i0 PRJNA407368 3681 305 3.996377 12.18894985 Tobamovirus tomatotessellati 3432892 Viruses Viruses 553 6.39e-153   NTclustered gi|226235018|dbj|AB355139.1| 12253 g3579 i0 99.344 99.9540983606557 305 2 100 0 1 305 4623 4319 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 30486 553 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
415041 415041 PRJNA407368_S_NODE_4301_length_276_cov_7.919028_g4199_i0 PRJNA407368 4301 276 7.919028 21.85651728 Chrocagosk virus 3129397 Viruses Viruses 359 1.34e-94   NTclustered gi|2717317479|gb|PP171845.1| 3129397 g4199 i0 92.771 22.0072463768116 249 17 90 1 28 276 1 248 MAG: Chrocagosk virus isolate CC1A_k141_83719 genomic sequence blastn 6074 359 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocagosk virus
1081742 1081742 PRJNA407368_S_NODE_1921_length_448_cov_3.665871_g1821_i0 PRJNA407368 1921 448 3.665871 16.42310208 Tobamovirus 12234 Viruses Viruses 817 0   NTclustered gi|4377853|gb|AF062519.1|AF062519 12242 g1821 i0 99.554 100 448 2 100 0 1 448 889 442 Tobacco mosaic virus movement protein and coat protein genes, complete cds blastn 44800 822 0.993917274939173 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
1689957 1689957 PRJNA407368_S_NODE_5442_length_234_cov_1586.517073_g5340_i0 PRJNA407368 5442 234 1586.517073 3712.44995082 Betacoronavirus pandemicum 3418604 Viruses Viruses 121 5.66e-23   NTclustered gi|2165837707|emb|OV197600.1| 2697049 g5340 i0 94.872 36.3760683760684 78 2 32 2 19 94 42 119 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8512 121 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
2965901 2965901 PRJNA407368_S_NODE_7543_length_188_cov_3.886792_g7441_i0 PRJNA407368 7543 188 3.886792 7.30716896 Bacteriophage sp. 38018 Viruses Viruses 348 1.84e-91   NTclustered gi|2059766425|tpg|BK039054.1| 38018 g7441 i0 100 564.537234042553 188 0 100 0 1 188 16929 17116 MAG TPA_asm: Bacteriophage sp. isolate cttqH15, partial genome blastn 106133 348 1 Viruses               Bacteriophage sp.
2965909 2965909 PRJNA407368_S_NODE_7803_length_184_cov_3.477419_g7701_i0 PRJNA407368 7803 184 3.477419 6.39845096 Caudoviricetes sp. 2832643 Viruses Viruses 335 1.3899999999999996e-87   NTclustered gi|2906150747|gb|PQ646533.1| 2832643 g7701 i0 99.457 1 184 1 100 0 1 184 7214 7397 MAG: Caudoviricetes sp. isolate k127_4397921 genomic sequence blastn 184 335 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
4909691 4909691 PRJNA407368_S_NODE_5584_length_230_cov_3.194030_g5482_i0 PRJNA407368 5584 230 3.19403 7.346269 Tobamovirus 12234 Viruses Viruses 420 4.89e-113   NTclustered gi|2085776112|gb|MZ388458.1| 12253 g5482 i0 99.565 99.995652173913 230 1 100 0 1 230 4598 4827 Tomato mosaic virus isolate ToMV-WF, complete genome blastn 22999 420 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
6792811 6792811 PRJNA407368_S_NODE_4786_length_257_cov_3.061404_g4684_i0 PRJNA407368 4786 257 3.061404 7.86780828 Psittacidae aveparvovirus 2794556 Viruses Viruses 263 9.92e-66   NTclustered gi|2015372674|gb|MW046380.1| 2794556 g4684 i0 94.675 0.929961089494163 169 9 92 0 21 189 681 513 MAG: Psittacidae aveparvovirus isolate fmg67par043 genomic sequence, sequence blastn 239 263 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus
8068344 8068344 PRJNA407368_S_NODE_2067_length_429_cov_24.220000_g1966_i0 PRJNA407368 2067 429 24.22 103.9038 Caudoviricetes sp. 2832643 Viruses Viruses 538 2.6099999999999992e-148   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g1966 i0 89.327 435.50582750582703 431 42 100 4 1 429 18219 17791 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 186832 538 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
8068446 8068446 PRJNA407368_S_NODE_667_length_786_cov_16.817701_g608_i0 PRJNA407368 667 786 16.817701 132.18712986 Caudoviricetes sp. 2832643 Viruses Viruses 907 0   NTclustered gi|2058043668|tpg|BK042394.1| 2832643 g608 i0 100 1.01017811704835 491 0 100 0 1 491 109474 109964 MAG TPA_asm: Caudoviricetes sp. isolate ctStP2, partial genome blastn 794 907 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9343343 9343343 PRJNA407368_S_NODE_868_length_697_cov_8.908683_g799_i0 PRJNA407368 868 697 8.908683 62.09352051 Caudoviricetes sp. 2832643 Viruses Viruses 318 6.209999999999998e-82   NTclustered gi|2906148703|gb|PQ646410.1| 2832643 g799 i0 81.205 1.03730272596844 415 61 100 13 290 697 24223 23819 MAG: Caudoviricetes sp. isolate k127_2521799 genomic sequence blastn 723 318 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
9343350 9343350 PRJNA407368_S_NODE_8_length_5759_cov_10.239791_g6_i0 PRJNA407368 8 5759 10.239791 589.70956369 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 1042 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g6 i0 96.226 0.553915610349019 636 24 55 0 2373 3008 639 4 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 3190 1042 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
10618952 10618952 PRJNA407368_S_NODE_1569_length_502_cov_12.181818_g1475_i0 PRJNA407368 1569 502 12.181818 61.15272636 Caudoviricetes sp. 2832643 Viruses Viruses 375 2.5599999999999997e-99   NTclustered gi|2906145245|gb|PQ646172.1| 2832643 g1475 i0 82.751 0.854581673306773 429 66 85 8 78 502 36573 36997 MAG: Caudoviricetes sp. isolate k127_1850996 genomic sequence blastn 429 375 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
10619098 10619098 PRJNA407368_S_NODE_8189_length_178_cov_5.342282_g8087_i0 PRJNA407368 8189 178 5.342282 9.50926196 uncultured virus 340016 Viruses Viruses 189 1.1e-43   NTclustered gi|1219813320|gb|KU970679.1| 340016 g8087 i0 87.273 0.926966292134832 165 21 93 0 11 175 211 375 Uncultured virus SERC_Contig_351799 co-chaperonin GroES (groES) gene, complete cds blastn 165 189 1 Viruses               uncultured virus
11893908 11893908 PRJNA407368_S_NODE_3550_length_311_cov_5.946809_g3448_i0 PRJNA407368 3550 311 5.946809 18.49457599 Caudoviricetes sp. 2832643 Viruses Viruses 93.5 1.71e-14   NTclustered gi|2053082307|tpg|BK020121.1| 2832643 g3448 i0 94.915 0.189710610932476 59 3 19 0 186 244 16006 15948 MAG TPA_asm: Caudoviricetes sp. isolate ct1j32, partial genome blastn 59 93.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
11893989 11893989 PRJNA407368_S_NODE_7570_length_188_cov_2.509434_g7468_i0 PRJNA407368 7570 188 2.509434 4.71773592 Caudoviricetes sp. 2832643 Viruses Viruses 198 1.9599999999999998e-46   NTclustered gi|2914826573|gb|OR222318.1| 2832643 g7468 i0 86.339 1.95744680851064 183 23 97 2 6 187 8389 8208 MAG: Caudoviricetes sp. isolate MSP1085 genomic sequence blastn 368 198 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
13168867 13168867 PRJNA407368_S_NODE_5151_length_243_cov_1510.425234_g5049_i0 PRJNA407368 5151 243 1510.425234 3670.3333186199998 Betacoronavirus pandemicum 3418604 Viruses Viruses 121 5.92e-23   NTclustered gi|2165837707|emb|OV197600.1| 2697049 g5049 i0 94.872 34.559670781893 78 2 31 2 150 225 119 42 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8398 121 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
14444032 14444032 PRJNA407368_S_NODE_5352_length_237_cov_3.634615_g5250_i0 PRJNA407368 5352 237 3.634615 8.61403755 Lentivirus equinfane 3418648 Viruses Viruses 438 1.4e-118   NTclustered gi|9944516|gb|AF247394.1|AF247394 11665 g5250 i0 100 32.2489451476793 237 0 100 0 1 237 3091 2855 Equine infectious anemia virus complete genome blastn 7643 438 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus equinfane
15717852 15717852 PRJNA407368_S_NODE_7673_length_186_cov_3.624204_g7571_i0 PRJNA407368 7673 186 3.624204 6.74101944 Chemarfal virus 260 3063286 Viruses Viruses 344 2.34e-90   NTclustered gi|2626079958|gb|OR270550.1| 3063286 g7571 i0 100 1 186 0 100 0 1 186 629 444 MAG: Chemarfal virus 260 isolate ML188 genomic sequence blastn 186 344 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 260
15717879 15717879 PRJNA407368_S_NODE_93_length_1983_cov_13.492323_g90_i0 PRJNA407368 93 1983 13.492323 267.55276509 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 2514 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g90 i0 92.312 0.931921331316188 1769 132 93 4 1 1767 7095 5329 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 1848 2514 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
16384126 16384126 PRJNA407368_S_NODE_6973_length_199_cov_2.347059_g6871_i0 PRJNA407368 6973 199 2.347059 4.67064741 root 1 Root_unresolved Root_unresolved 252 1.59e-62   NTclustered gi|2914812517|gb|OR221846.1| 2832643 g6871 i0 89.447 52.3668341708543 199 21 100 0 1 199 22414 22216 MAG: Caudoviricetes sp. isolate MSP1164 genomic sequence blastn 10421 252 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
19540924 19540924 PRJNA407368_S_NODE_7436_length_190_cov_13.273292_g7334_i0 PRJNA407368 7436 190 13.273292 25.2192548 Caudoviricetes sp. 2832643 Viruses Viruses 158 3.36e-34   NTclustered gi|2054434277|tpg|BK035998.1| 2832643 g7334 i0 81.675 495.268421052632 191 33 100 2 1 190 17968 18157 MAG TPA_asm: Caudoviricetes sp. isolate ctbaE6, partial genome blastn 94101 158 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
20816838 20816838 PRJNA407368_S_NODE_9217_length_165_cov_3.705882_g9115_i0 PRJNA407368 9217 165 3.705882 6.1147053 Bacteriophage sp. 38018 Viruses Viruses 300 4.46e-77   NTclustered gi|2052967766|tpg|BK030349.1| 38018 g9115 i0 99.394 14.0606060606061 165 1 100 0 1 165 58136 58300 MAG TPA_asm: Bacteriophage sp. isolate cteMW17, partial genome blastn 2320 300 1 Viruses               Bacteriophage sp.
22091637 22091637 PRJNA407368_S_NODE_7698_length_186_cov_2.382166_g7596_i0 PRJNA407368 7698 186 2.382166 4.43082876 Psittacidae aveparvovirus 2794556 Viruses Viruses 289 1.11e-73   NTclustered gi|2015372674|gb|MW046380.1| 2794556 g7596 i0 94.624 1 186 10 100 0 1 186 469 284 MAG: Psittacidae aveparvovirus isolate fmg67par043 genomic sequence, sequence blastn 186 289 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;