RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA407368" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407368 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9343299 9343299 PRJNA407368_S_NODE_6448_length_209_cov_2704.511111_g6346_i0 PRJNA407368 6448 209 2704.511111 5652.42822199 uncultured methanogenic archaeon 198240 Archaea Archaea 272 1.29e-68   NTclustered gi|378829980|gb|JN681962.1| 198240 g6346 i0 99.333 98.3923444976077 150 1 100 0 60 209 155 304 Uncultured methanogenic archaeon clone Brum-091 16S ribosomal RNA gene, partial sequence blastn 20564 272 1 Archaea   Methanobacteriati Methanobacteriota         uncultured methanogenic archaeon
10009787 10009787 PRJNA407368_S_NODE_4588_length_264_cov_1782.800000_g4486_i0 PRJNA407368 4588 264 1782.8 4706.592 root 1 Root_unresolved Root_unresolved 407 4.47e-109   NTclustered gi|2621785414|emb|OY781872.1| 1005933 g4486 i0 99.115 324.878787878788 226 2 100 0 1 226 3115394 3115619 MAG: uncultured Methanoregula sp. isolate a338d9b7-13de-4e9d-8f1a-cfe667c23436 genome assembly, chromosome: 1 blastn 85768 407 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanoregulaceae Methanoregula uncultured Methanoregula sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;