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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA407368" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 21 ✖

tax_clade 1

bioproject 1

  • PRJNA407368 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1081762 1081762 PRJNA407368_S_NODE_4341_length_274_cov_22.053061_g4239_i0 PRJNA407368 4341 274 22.053061 60.42538714 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 507 4.47e-139   NTclustered gi|300078496|gb|GU001158.1| 5778 g4239 i0 100 37 274 0 100 0 1 274 1219 946 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10138 507 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2357135 2357135 PRJNA407368_S_NODE_4322_length_275_cov_59.516260_g4220_i0 PRJNA407368 4322 275 59.51626 163.669715 Vermamoeba 1260114 Tubulinea other_Eukaryota 363 1.03e-95   NTclustered gi|909719645|gb|KT185625.1| 5778 g4220 i0 92.218 58.2072727272727 257 19 93 1 3 258 4544 4288 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16007 363 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2965934 2965934 PRJNA407368_S_NODE_8903_length_169_cov_36.092857_g8801_i0 PRJNA407368 8903 169 36.092857 60.99692833 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 287 3.55e-73   NTclustered gi|300078496|gb|GU001158.1| 5778 g8801 i0 97.076 96.9822485207101 171 3 100 2 1 169 2267 2437 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16390 287 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6792731 6792731 PRJNA407368_S_NODE_1326_length_549_cov_65.444231_g1239_i0 PRJNA407368 1326 549 65.444231 359.28882819 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 566 1.56e-156   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g1239 i0 100 60.8670309653916 306 0 100 0 244 549 586 891 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 33416 566 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
7459648 7459648 PRJNA407368_S_NODE_5506_length_232_cov_5.251232_g5404_i0 PRJNA407368 5506 232 5.251232 12.18285824 Vermamoeba 1260114 Tubulinea other_Eukaryota 429 8.2e-116   NTclustered gi|2806326577|gb|PQ345827.1| 5778 g5404 i0 100 100 232 0 100 0 1 232 377 146 Vermamoeba vermiformis isolate 8FSa small subunit ribosomal RNA gene, partial sequence blastn 23200 429 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7459669 7459669 PRJNA407368_S_NODE_8046_length_180_cov_59.715232_g7944_i0 PRJNA407368 8046 180 59.715232 107.4874176 Vermamoeba 1260114 Tubulinea other_Eukaryota 287 3.85e-73   NTclustered gi|1016841274|gb|KU746981.1| 5778 g7944 i0 100 86.1111111111111 155 0 86 0 26 180 178 24 Vermamoeba vermiformis isolate SSH23 18S ribosomal RNA gene, partial sequence blastn 15500 287 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10009764 10009764 PRJNA407368_S_NODE_2148_length_419_cov_82.374359_g2047_i0 PRJNA407368 2148 419 82.374359 345.14856421 root 1 Root_unresolved Root_unresolved 691 0   NTclustered gi|292559443|ref|NC_013986.1| 5778 g2047 i0 96.852 40.7016706443914 413 13 99 0 1 413 19520 19932 Hartmannella vermiformis mitochondrion, complete genome blastn 17054 691 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11285000 11285000 PRJNA407368_S_NODE_5869_length_223_cov_3.396907_g5767_i0 PRJNA407368 5869 223 3.396907 7.57510261 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 368 1.73e-97   NTclustered gi|300078496|gb|GU001158.1| 5778 g5767 i0 96.413 40.9641255605381 223 8 100 0 1 223 1213 1435 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9135 368 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11893922 11893922 PRJNA407368_S_NODE_4030_length_288_cov_57.212355_g3928_i0 PRJNA407368 4030 288 57.212355 164.7715824 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 444 3.76e-120   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g3928 i0 94.483 43.8055555555556 290 13 100 3 1 288 3918 4206 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12616 444 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
13168892 13168892 PRJNA407368_S_NODE_6071_length_218_cov_3.264550_g5969_i0 PRJNA407368 6071 218 3.26455 7.116719 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 209 1.08e-49   NTclustered gi|909719645|gb|KT185625.1| 5778 g5969 i0 84.977 0.977064220183486 213 25 97 7 8 218 827 620 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 213 209 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14444025 14444025 PRJNA407368_S_NODE_5052_length_247_cov_4.761468_g4950_i0 PRJNA407368 5052 247 4.761468 11.76082596 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 211 3.48e-50   NTclustered gi|292559443|ref|NC_013986.1| 5778 g4950 i0 82.731 1.63157894736842 249 32 100 6 1 247 26819 27058 Hartmannella vermiformis mitochondrion, complete genome blastn 403 211 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15717787 15717787 PRJNA407368_S_NODE_4353_length_274_cov_4.138776_g4251_i0 PRJNA407368 4353 274 4.138776 11.34024624 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 405 1.68e-108   NTclustered gi|909719645|gb|KT185625.1| 5778 g4251 i0 97.872 42.5510948905109 235 4 100 1 41 274 6728 6962 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 11659 405 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16384141 16384141 PRJNA407368_S_NODE_7913_length_182_cov_60.803922_g7811_i0 PRJNA407368 7913 182 60.803922 110.66313804 Vermamoeba 1260114 Tubulinea other_Eukaryota 331 1.7800000000000002e-86   NTclustered gi|1345606837|gb|MG969829.1| 5778 g7811 i0 99.451 100.038461538462 182 1 100 0 1 182 197 378 Vermamoeba vermiformis isolate Hart1f small subunit ribosomal RNA gene, partial sequence blastn 18207 331 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19540798 19540798 PRJNA407368_S_NODE_1876_length_453_cov_192.978774_g1778_i0 PRJNA407368 1876 453 192.978774 874.19384622 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 460 6.16e-125   NTclustered gi|300078496|gb|GU001158.1| 5778 g1778 i0 99.603 2.51655629139073 252 1 100 0 202 453 3416 3667 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1140 460 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19540895 19540895 PRJNA407368_S_NODE_6196_length_215_cov_18.032258_g6094_i0 PRJNA407368 6196 215 18.032258 38.7693547 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 392 9.83e-105   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g6094 i0 99.535 98.2558139534884 215 1 100 0 1 215 3311 3097 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21125 392 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
20816694 20816694 PRJNA407368_S_NODE_2577_length_377_cov_51.514368_g2475_i0 PRJNA407368 2577 377 51.514368 194.20916736 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 665 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g2475 i0 100 22.7612732095491 360 0 95 0 18 377 1706 1347 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 8581 665 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
20816713 20816713 PRJNA407368_S_NODE_337_length_1102_cov_17.371855_g305_i0 PRJNA407368 337 1102 17.371855 191.4378421 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 725 0   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g305 i0 98.54 29.9582577132486 411 5 37 1 693 1102 3 413 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 33014 725 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
22091579 22091579 PRJNA407368_S_NODE_5018_length_248_cov_4.173516_g4916_i0 PRJNA407368 5018 248 4.173516 10.35031968 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 248 2.67e-61   NTclustered gi|292559443|ref|NC_013986.1| 5778 g4916 i0 86.076 0.955645161290323 237 26 94 6 15 248 25765 25997 Hartmannella vermiformis mitochondrion, complete genome blastn 237 248 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22091595 22091595 PRJNA407368_S_NODE_5738_length_226_cov_6.167513_g5636_i0 PRJNA407368 5738 226 6.167513 13.93857938 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 322 1.39e-83   NTclustered gi|292559443|ref|NC_013986.1| 5778 g5636 i0 95.098 75.2654867256637 204 10 90 0 1 204 28025 28228 Hartmannella vermiformis mitochondrion, complete genome blastn 17010 322 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22758613 22758613 PRJNA407368_S_NODE_1238_length_566_cov_98.875233_g1154_i0 PRJNA407368 1238 566 98.875233 559.63381878 Vermamoeba 1260114 Tubulinea other_Eukaryota 898 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g1154 i0 99.593 26.7809187279152 492 2 87 0 32 523 2410 2901 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15158 898 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24641598 24641598 PRJNA407368_S_NODE_8900_length_169_cov_132.278571_g8798_i0 PRJNA407368 8900 169 132.278571 223.55078499 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 267 4.63e-67   NTclustered gi|300078496|gb|GU001158.1| 5778 g8798 i0 96.875 96.1775147928994 160 4 95 1 2 161 3818 3660 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16254 267 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;