RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA407368" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407368 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2965806 2965806 PRJNA407368_S_NODE_3523_length_312_cov_9.685512_g3421_i0 PRJNA407368 3523 312 9.685512 30.21879744 planctomycete str. 139 149588 Bacteria Bacteria 433 8.92e-117   NTclustered gi|12583967|gb|AF245371.1|AF245371 149588 g3421 i0 92.308 203.163461538462 312 12 100 8 1 312 1857 1558 Planctomycete str. 139 23S ribosomal RNA gene, partial sequence blastn 63387 433 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   planctomycete str. 139
4242184 4242184 PRJNA407368_S_NODE_4524_length_267_cov_31.550420_g4422_i0 PRJNA407368 4524 267 31.55042 84.2396214 Isosphaeraceae bacterium EP7 3139350 Bacteria Bacteria 316 7.849999999999998e-82   NTclustered gi|2719878338|gb|CP151667.1| 3139350 g4422 i0 88.192 355.277153558052 271 25 100 5 1 267 1600806 1600539 Isosphaeraceae bacterium EP7 chromosome, complete genome blastn 94859 316 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium EP7
5518778 5518778 PRJNA407368_S_NODE_1285_length_556_cov_38.753321_g1199_i0 PRJNA407368 1285 556 38.753321 215.46846476 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 616 1.5499999999999996e-171   NTclustered gi|1927958621|gb|CP054186.1| 2026777 g1199 i0 87.57 150.210431654676 539 58 96 8 21 556 1866215 1866747 MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome blastn 83517 616 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
9343163 9343163 PRJNA407368_S_NODE_10088_length_155_cov_3.301587_g9986_i0 PRJNA407368 10088 155 3.301587 5.11745985 Phycisphaeraceae bacterium 2026777 Bacteria Bacteria 121 3.439999999999999e-23   NTclustered gi|2621705104|emb|OY763327.1| 2026777 g9986 i0 81.013 8.71612903225807 158 24 99 6 1 153 1575890 1575734 MAG: Phycisphaeraceae bacterium isolate 55aab3a5-de4e-4c55-acd5-ede7382e386b genome assembly, chromosome: 1 blastn 1351 121 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales Phycisphaeraceae   Phycisphaeraceae bacterium
10009783 10009783 PRJNA407368_S_NODE_4228_length_279_cov_27.968000_g4126_i0 PRJNA407368 4228 279 27.968 78.03072 Gemmata 113 Bacteria Bacteria 363 1.0499999999999999e-95   NTclustered gi|1727537522|gb|CP042911.1| 114 g4126 i0 90.323 303.795698924731 279 23 99 4 3 279 1036073 1036349 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 84759 363 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
22758671 22758671 PRJNA407368_S_NODE_7678_length_186_cov_3.299363_g7576_i0 PRJNA407368 7678 186 3.299363 6.13681518 Planctomycetia 203683 Bacteria Bacteria 252 1.46e-62   NTclustered gi|1015454008|gb|CP011273.1| 1636152 g7576 i0 93.529 116.586021505376 170 9 96 2 9 177 1156589 1156757 Planctomyces sp. SH-PL62, complete genome blastn 21685 252 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL62

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;