RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA407368" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA407368 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4242217 4242217 PRJNA407368_S_NODE_5764_length_225_cov_180.714286_g5662_i0 PRJNA407368 5764 225 180.714286 406.6071435 Acidobacteriota bacterium 1978231 Bacteria Bacteria 195 3.14e-45   NTclustered gi|1958093598|gb|CP065003.1| 1978231 g5662 i0 84.314 470.493333333333 204 27 90 4 1 202 317764 317564 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.185_cln chromosome, complete genome blastn 105861 195 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
16992529 16992529 PRJNA407368_S_NODE_10454_length_152_cov_2.040650_g10352_i0 PRJNA407368 10454 152 2.04065 3.101788 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 97.1 5.66e-16   NTclustered gi|2874254056|emb|OY970380.1| 2651171 g10352 i0 88.608 23.3815789473684 79 9 52 0 1 79 3682076 3682154 MAG: Thermoanaerobaculia bacterium isolate MFD05537.bin.c.2 genome assembly, chromosome: 1 blastn 3554 97.1 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
16992606 16992606 PRJNA407368_S_NODE_3674_length_305_cov_5.923913_g3572_i0 PRJNA407368 3674 305 5.923913 18.06793465 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 224 5.69e-54   NTclustered gi|2874253692|emb|OY969418.1| 171953 g3572 i0 83.265 110.84918032786901 245 39 80 2 29 273 4232471 4232229 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 33809 224 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;