RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA407368" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 9 ✖

bioproject 1

  • PRJNA407368 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
415027 415027 PRJNA407368_S_NODE_3681_length_305_cov_3.996377_g3579_i0 PRJNA407368 3681 305 3.996377 12.18894985 Tobamovirus tomatotessellati 3432892 Viruses Viruses 553 6.39e-153   NTclustered gi|226235018|dbj|AB355139.1| 12253 g3579 i0 99.344 99.9540983606557 305 2 100 0 1 305 4623 4319 Tomato mosaic virus genomic RNA, complete genome, strain: L11Y blastn 30486 553 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
415041 415041 PRJNA407368_S_NODE_4301_length_276_cov_7.919028_g4199_i0 PRJNA407368 4301 276 7.919028 21.85651728 Chrocagosk virus 3129397 Viruses Viruses 359 1.34e-94   NTclustered gi|2717317479|gb|PP171845.1| 3129397 g4199 i0 92.771 22.0072463768116 249 17 90 1 28 276 1 248 MAG: Chrocagosk virus isolate CC1A_k141_83719 genomic sequence blastn 6074 359 1 Viruses   Orthornavirae Lenarviricota Amabiliviricetes       Chrocagosk virus
1081742 1081742 PRJNA407368_S_NODE_1921_length_448_cov_3.665871_g1821_i0 PRJNA407368 1921 448 3.665871 16.42310208 Tobamovirus 12234 Viruses Viruses 817 0   NTclustered gi|4377853|gb|AF062519.1|AF062519 12242 g1821 i0 99.554 100 448 2 100 0 1 448 889 442 Tobacco mosaic virus movement protein and coat protein genes, complete cds blastn 44800 822 0.993917274939173 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
1689957 1689957 PRJNA407368_S_NODE_5442_length_234_cov_1586.517073_g5340_i0 PRJNA407368 5442 234 1586.517073 3712.44995082 Betacoronavirus pandemicum 3418604 Viruses Viruses 121 5.66e-23   NTclustered gi|2165837707|emb|OV197600.1| 2697049 g5340 i0 94.872 36.3760683760684 78 2 32 2 19 94 42 119 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8512 121 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
4909691 4909691 PRJNA407368_S_NODE_5584_length_230_cov_3.194030_g5482_i0 PRJNA407368 5584 230 3.19403 7.346269 Tobamovirus 12234 Viruses Viruses 420 4.89e-113   NTclustered gi|2085776112|gb|MZ388458.1| 12253 g5482 i0 99.565 99.995652173913 230 1 100 0 1 230 4598 4827 Tomato mosaic virus isolate ToMV-WF, complete genome blastn 22999 420 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tomatotessellati
9343350 9343350 PRJNA407368_S_NODE_8_length_5759_cov_10.239791_g6_i0 PRJNA407368 8 5759 10.239791 589.70956369 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 1042 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g6 i0 96.226 0.553915610349019 636 24 55 0 2373 3008 639 4 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 3190 1042 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2
13168867 13168867 PRJNA407368_S_NODE_5151_length_243_cov_1510.425234_g5049_i0 PRJNA407368 5151 243 1510.425234 3670.3333186199998 Betacoronavirus pandemicum 3418604 Viruses Viruses 121 5.92e-23   NTclustered gi|2165837707|emb|OV197600.1| 2697049 g5049 i0 94.872 34.559670781893 78 2 31 2 150 225 119 42 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 8398 121 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
15717852 15717852 PRJNA407368_S_NODE_7673_length_186_cov_3.624204_g7571_i0 PRJNA407368 7673 186 3.624204 6.74101944 Chemarfal virus 260 3063286 Viruses Viruses 344 2.34e-90   NTclustered gi|2626079958|gb|OR270550.1| 3063286 g7571 i0 100 1 186 0 100 0 1 186 629 444 MAG: Chemarfal virus 260 isolate ML188 genomic sequence blastn 186 344 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 260
15717879 15717879 PRJNA407368_S_NODE_93_length_1983_cov_13.492323_g90_i0 PRJNA407368 93 1983 13.492323 267.55276509 Danio blood picornavirus/Zebrafish picornavirus 2 3063761 Viruses Viruses 2514 0   NTclustered gi|2551699335|gb|OK619588.1| 3063761 g90 i0 92.312 0.931921331316188 1769 132 93 4 1 1767 7095 5329 Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds blastn 1848 2514 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Danio blood picornavirus/Zebrafish picornavirus 2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;