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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA407368" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA407368 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7459678 7459678 PRJNA407368_S_NODE_8726_length_171_cov_2356.049296_g8624_i0 PRJNA407368 8726 171 2356.049296 4028.84429616 Pseudomonadati 3379134 Bacteria Bacteria 300 4.63e-77   NTclustered gi|343206979|gb|JN371756.1| 34034 g8624 i0 98.246 100.023391812865 171 3 100 0 1 171 370 200 Uncultured delta proteobacterium clone B12-54 16S ribosomal RNA gene, partial sequence blastn 17104 300 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12560394 12560394 PRJNA407368_S_NODE_5030_length_247_cov_2426.334862_g4928_i0 PRJNA407368 5030 247 2426.334862 5993.04710914 Bacteria 2 Bacteria Bacteria 457 4.05e-124   NTclustered gi|202950689|emb|FM206054.1| 34034 g4928 i0 100 99.9838056680162 247 0 100 0 1 247 13 259 Uncultured delta proteobacterium partial 16S rRNA gene, clone GW_1 blastn 24696 457 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15109416 15109416 PRJNA407368_S_NODE_1112_length_598_cov_17.231986_g1035_i0 PRJNA407368 1112 598 17.231986 103.04727628 Bacteria 2 Bacteria Bacteria 549 1.7199999999999993e-151   NTclustered gi|374854163|dbj|AP011765.1| 34034 g1035 i0 83.416 124.464882943144 603 88 100 11 1 598 13824 13229 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 74430 551 0.996370235934664 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17659248 17659248 PRJNA407368_S_NODE_3054_length_339_cov_34.032258_g2952_i0 PRJNA407368 3054 339 34.032258 115.36935462 Aetherobacter 888829 Bacteria Bacteria 453 7.51e-123   NTclustered gi|146428836|gb|EF219652.1| 34034 g2952 i0 92.744 98.8230088495575 317 17 93 5 1 315 313 1 Uncultured delta proteobacterium clone AI-1M_A12 16S ribosomal RNA gene, partial sequence blastn 33501 453 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;