RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA407087" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407087 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
414871 414871 PRJNA407087_S_NODE_1581_length_536_cov_16.224852_g1157_i0 PRJNA407087 1581 536 16.224852 86.96520672 Philodina citrina 468664 Rotifera other_Eukaryota 556 9.15e-154   NTclustered gi|407227484|emb|FR856884.1| 468664 g1157 i0 85.741 24.875 540 61 99 14 1 534 1745 2274 Philodina citrina complete mitochondrial genome blastn 13333 556 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
414913 414913 PRJNA407087_S_NODE_5301_length_223_cov_5.335052_g4838_i0 PRJNA407087 5301 223 5.335052 11.89716596 Habrotrocha constricta 104786 Rotifera other_Eukaryota 291 3.85e-74   NTclustered gi|402761757|gb|JX184010.1| 104786 g4838 i0 90.135 38.9596412556054 223 22 100 0 1 223 254 476 Habrotrocha constricta cytochrome c oxidase subunit 2 (COX2) gene, complete cds; mitochondrial blastn 8688 291 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
2965700 2965700 PRJNA407087_S_NODE_5563_length_216_cov_3.550802_g5100_i0 PRJNA407087 5563 216 3.550802 7.66973232 Philodina citrina 468664 Rotifera other_Eukaryota 239 1.36e-58   NTclustered gi|407227484|emb|FR856884.1| 468664 g5100 i0 87.324 19.8657407407407 213 21 97 6 1 210 1182 1391 Philodina citrina complete mitochondrial genome blastn 4291 239 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
16992506 16992506 PRJNA407087_S_NODE_7734_length_174_cov_4.027586_g7271_i0 PRJNA407087 7734 174 4.027586 7.00799964 Habrotrocha constricta 104786 Rotifera other_Eukaryota 250 4.84e-62   NTclustered gi|402761741|gb|JX184002.1| 104786 g7271 i0 92.529 99.5 174 13 100 0 1 174 849 676 Habrotrocha constricta cytochrome c oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 17313 250 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Habrotrochidae Habrotrocha Habrotrocha constricta
18266563 18266563 PRJNA407087_S_NODE_4515_length_254_cov_3.622222_g4052_i0 PRJNA407087 4515 254 3.622222 9.20044388 Adineta oculata 338306 Rotifera other_Eukaryota 470 5.37e-128   NTclustered gi|71840136|gb|DQ078515.1| 338306 g4052 i0 100 99.6692913385827 254 0 100 0 1 254 440 187 Adineta oculata clone War1.1 cytochrome oxidase subunit 1 (cox1) gene, partial cds; mitochondrial blastn 25316 470 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta oculata
20816629 20816629 PRJNA407087_S_NODE_8117_length_169_cov_2.771429_g7654_i0 PRJNA407087 8117 169 2.771429 4.68371501 Adineta ricciae 249248 Rotifera other_Eukaryota 171 3.73e-38   NTclustered gi|403492568|gb|JX193023.1| 249248 g7654 i0 95.327 48.5621301775148 107 5 99 0 61 167 1027 921 Adineta ricciae isolate AU.1.2 alpha tubulin gene, partial cds blastn 8207 171 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta ricciae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;