RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA407087" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA407087 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5518726 5518726 PRJNA407087_S_NODE_4465_length_256_cov_8.823789_g4002_i0 PRJNA407087 4465 256 8.823789 22.58889984 Littorina saxatilis 31220 Mollusca Mollusca 91.6 4.93e-14   NTclustered gi|2868609750|ref|XM_070343994.1| 31220 g4002 i0 91.304 16.65234375 69 3 26 3 1 66 1365 1433 PREDICTED: Littorina saxatilis tubulin beta-4B chain-like (LOC138971279), mRNA blastn 4263 91.6 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Littorinidae Littorina Littorina saxatilis
16992499 16992499 PRJNA407087_S_NODE_6794_length_190_cov_1.695652_g6331_i0 PRJNA407087 6794 190 1.695652 3.2217388 Biomphalaria glabrata 6526 Mollusca Mollusca 189 1.19e-43   NTclustered gi|2502149611|ref|XM_056020795.1| 6526 g6331 i0 86.905 24.2736842105263 168 22 88 0 18 185 323 156 PREDICTED: Biomphalaria glabrata 40S ribosomal protein S14 (LOC106056330), mRNA blastn 4612 189 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;