contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA407087" and tax_phylum = "Chordata"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2357096 | 2357096 | PRJNA407087_S_NODE_5242_length_225_cov_4.974490_g4779_i0 | PRJNA407087 | 5242 | 225 | 4.97449 | 11.1926025 | Eukaryota | 2759 | unresolved_Eukaryota | other_Eukaryota | 52.8 | 0.02 | NTclustered | gi|2596042956|ref|XM_035131187.2| | 8524 | g4779 | i0 | 100 | 1.99111111111111 | 28 | 0 | 12 | 0 | 73 | 100 | 1562 | 1589 | PREDICTED: Zootoca vivipara myelin expression factor 2 (MYEF2), mRNA | blastn | 448 | 52.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Lepidosauria | Squamata | Lacertidae | Zootoca | Zootoca vivipara | |
| 8068295 | 8068295 | PRJNA407087_S_NODE_787_length_837_cov_7.383663_g501_i0 | PRJNA407087 | 787 | 837 | 7.383663 | 61.80125931 | Xenopus tropicalis | 8364 | Chordata | Chordata | 1075 | 0 | NTclustered | gi|38512082|gb|BC061437.1| | 8364 | g501 | i0 | 89.893 | 56.1266427718041 | 841 | 77 | 100 | 5 | 1 | 837 | 851 | 15 | Xenopus tropicalis 40S ribosomal protein S6, mRNA (cDNA clone MGC:76319 IMAGE:5380258), complete cds | blastn | 46978 | 1075 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Amphibia | Anura | Pipidae | Xenopus | Xenopus tropicalis | |
| 10009739 | 10009739 | PRJNA407087_S_NODE_5248_length_225_cov_3.454082_g4785_i0 | PRJNA407087 | 5248 | 225 | 3.454082 | 7.7716845 | Anura | 8342 | Chordata | Chordata | 52.8 | 0.02 | NTclustered | gi|2019542844|ref|XM_040439790.1| | 8384 | g4785 | i0 | 100 | 0.373333333333333 | 28 | 0 | 12 | 0 | 7 | 34 | 250 | 223 | PREDICTED: Bufo bufo eukaryotic translation initiation factor 3 subunit B (EIF3B), mRNA | blastn | 84 | 52.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Amphibia | Anura | Bufonidae | Bufo | Bufo bufo | |
| 10618865 | 10618865 | PRJNA407087_S_NODE_1909_length_480_cov_3.917960_g1463_i0 | PRJNA407087 | 1909 | 480 | 3.91796 | 18.806208 | Acomys russatus | 60746 | Chordata | Chordata | 60.2 | 2.79e-4 | NTclustered | gi|2318351005|ref|XM_051172399.1| | 60746 | g1463 | i0 | 94.872 | 7.01458333333333 | 39 | 1 | 8 | 1 | 231 | 268 | 18118 | 18080 | PREDICTED: Acomys russatus adhesion G protein-coupled receptor V1 (Adgrv1), mRNA | blastn | 3367 | 60.2 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Muridae | Acomys | Acomys russatus | |
| 14443921 | 14443921 | PRJNA407087_S_NODE_9752_length_152_cov_3.707317_g9289_i0 | PRJNA407087 | 9752 | 152 | 3.707317 | 5.63512184 | Styela clava | 7725 | Chordata | Chordata | 191 | 2.52e-44 | NTclustered | gi|1981760527|ref|XM_039418685.1| | 7725 | g9289 | i0 | 89.542 | 34.6907894736842 | 153 | 13 | 100 | 3 | 1 | 152 | 351 | 201 | PREDICTED: Styela clava actin, cytoplasmic-like (LOC120348531), transcript variant X3, mRNA | blastn | 5273 | 191 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Ascidiacea | Stolidobranchia | Styelidae | Styela | Styela clava | |
| 19540722 | 19540722 | PRJNA407087_S_NODE_2256_length_431_cov_3.370647_g1795_i0 | PRJNA407087 | 2256 | 431 | 3.370647 | 14.52748857 | Bos taurus | 9913 | Chordata | Chordata | 385 | 3.61e-102 | NTclustered | gi|114155062|gb|AY563849.1| | 9913 | g1795 | i0 | 86.111 | 0.835266821345708 | 360 | 47 | 83 | 3 | 1 | 358 | 70 | 428 | Bos taurus clone NG010008B20F06 mRNA, complete sequence | blastn | 360 | 385 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Artiodactyla | Bovidae | Bos | Bos taurus | |
| 19540764 | 19540764 | PRJNA407087_S_NODE_8476_length_165_cov_1.544118_g8013_i0 | PRJNA407087 | 8476 | 165 | 1.544118 | 2.5477947 | Taeniopygia guttata | 59729 | Chordata | Chordata | 56.5 | 0.001 | NTclustered | gi|2043849737|ref|XM_041720520.1| | 59729 | g8013 | i0 | 92.308 | 0.236363636363636 | 39 | 3 | 24 | 0 | 112 | 150 | 1720 | 1682 | PREDICTED: Taeniopygia guttata cell surface glycoprotein 1-like (LOC116809221), mRNA | blastn | 39 | 56.5 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Aves | Passeriformes | Estrildidae | Taeniopygia | Taeniopygia guttata | |
| 21483378 | 21483378 | PRJNA407087_S_NODE_4317_length_263_cov_4.521368_g3854_i0 | PRJNA407087 | 4317 | 263 | 4.521368 | 11.89119784 | Passeriformes | 9126 | Chordata | Chordata | 65.8 | 3.08e-6 | NTclustered | gi|2917587946|emb|OZ228645.1| | 50251 | g3854 | i0 | 97.368 | 2.48669201520913 | 38 | 1 | 14 | 0 | 226 | 263 | 4532112 | 4532075 | Sitta europaea genome assembly, chromosome: 24 | blastn | 654 | 65.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Aves | Passeriformes | Sittidae | Sitta | Sitta europaea | |
| 23367071 | 23367071 | PRJNA407087_S_NODE_6719_length_191_cov_4.037037_g6256_i0 | PRJNA407087 | 6719 | 191 | 4.037037 | 7.71074067 | Xenopus tropicalis | 8364 | Chordata | Chordata | 270 | 4.17e-68 | NTclustered | gi|51895800|gb|BC080974.1| | 8364 | g6256 | i0 | 92.147 | 100.51832460733 | 191 | 15 | 100 | 0 | 1 | 191 | 897 | 707 | Xenopus tropicalis hypothetical LOC493206, mRNA (cDNA clone IMAGE:6984500), partial cds | blastn | 19199 | 270 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Amphibia | Anura | Pipidae | Xenopus | Xenopus tropicalis | |
| 24033378 | 24033378 | PRJNA407087_S_NODE_6559_length_194_cov_3.406061_g6096_i0 | PRJNA407087 | 6559 | 194 | 3.406061 | 6.60775834 | Cricetidae | 337677 | Chordata | Chordata | 52.8 | 0.017 | NTclustered | gi|2246065583|ref|XM_048442227.1| | 447135 | g6096 | i0 | 96.875 | 0.989690721649485 | 32 | 0 | 16 | 1 | 23 | 54 | 731 | 701 | PREDICTED: Myodes glareolus bile acid receptor-like (LOC125405635), transcript variant X2, mRNA | blastn | 192 | 52.8 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Rodentia | Cricetidae | Myodes | Myodes glareolus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;