RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA404067" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_kingdom 2

tax_superkingdom 1

  • Archaea · 3 ✖

bioproject 1

  • PRJNA404067 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6792246 6792246 PRJNA404067_P_NODE_22306_length_230_cov_1.218935_g21919_i0 PRJNA404067 22306 230 1.218935 2.8035505 Nitrosarchaeum sp. AC2 2259673 Archaea Archaea 425 1.05e-114   NTclustered gi|1869229208|gb|CP030847.1| 2259673 g21919 i0 100 7 230 0 100 0 1 230 302892 302663 Nitrosarchaeum sp. AC2 chromosome, complete genome blastn 1610 425 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp. AC2
11284485 11284485 PRJNA404067_P_NODE_16549_length_255_cov_4.139175_g16162_i0 PRJNA404067 16549 255 4.139175 10.55489625 root 1 Root_unresolved Root_unresolved 54.7 0.006   NTclustered gi|188032290|emb|AM998396.1| 114243 g16162 i0 100 0.556862745098039 29 0 11 0 91 119 574 602 Uncultured euryarchaeote partial 16S rRNA gene, clone HalAS_A1 blastn 142 54.7 1 Archaea   Methanobacteriati Methanobacteriota         uncultured euryarchaeote
14443320 14443320 PRJNA404067_P_NODE_11052_length_322_cov_4.011494_g10667_i0 PRJNA404067 11052 322 4.011494 12.91701068 Candidatus Nitrosocosmicus hydrocola 1826872 Archaea Archaea 272 2.1299999999999993e-68   NTclustered gi|1100598057|gb|CP017922.1| 1826872 g10667 i0 92.228 10.4006211180124 193 13 59 2 131 321 1792309 1792117 Candidatus Nitrosocosmicus hydrocola strain G61, complete genome blastn 3349 272 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus hydrocola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;