RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA404067" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8733950 8733950 PRJNA404067_P_NODE_11367_length_315_cov_15.492126_g10982_i0 PRJNA404067 11367 315 15.492126 48.8001969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 364 3.3299999999999986e-96   NTclustered gi|54306228|gb|AY626163.1| 297386 g10982 i0 95.982 68.5174603174603 224 9 71 0 92 315 615 392 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 21583 364 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
13834683 13834683 PRJNA404067_P_NODE_15171_length_266_cov_1.985366_g14784_i0 PRJNA404067 15171 266 1.985366 5.28107356 Vermamoeba 1260114 Tubulinea other_Eukaryota 459 1.2299999999999998e-124   NTclustered gi|909719645|gb|KT185625.1| 5778 g14784 i0 97.744 3 266 6 100 0 1 266 5350 5085 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 798 459 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15717571 15717571 PRJNA404067_P_NODE_44353_length_171_cov_5.654545_g43966_i0 PRJNA404067 44353 171 5.654545 9.66927195 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 313 5.95e-81   NTclustered gi|909719645|gb|KT185625.1| 5778 g43966 i0 100 83.6783625730994 169 0 99 0 3 171 4858 4690 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 14309 313 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16383589 16383589 PRJNA404067_P_NODE_16413_length_256_cov_2.835897_g16026_i0 PRJNA404067 16413 256 2.835897 7.25989632 Tubulinea 555369 Tubulinea other_Eukaryota 473 4.189999999999999e-129   NTclustered gi|399764177|gb|JQ271688.1| 5778 g16026 i0 100 100 256 0 100 0 1 256 141 396 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 25600 473 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16383704 16383704 PRJNA404067_P_NODE_24873_length_223_cov_1.623457_g24486_i0 PRJNA404067 24873 223 1.623457 3.62030911 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 374 3.72e-99   NTclustered gi|300078496|gb|GU001158.1| 5778 g24486 i0 96.861 44.2017937219731 223 7 100 0 1 223 1221 999 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9857 374 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;