RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA404067" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA404067 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4241702 4241702 PRJNA404067_P_NODE_27824_length_216_cov_1.361290_g27437_i0 PRJNA404067 27824 216 1.3612899999999999 2.9403864 Gastropus stylifer 1917129 Rotifera other_Eukaryota 394 2.75e-105   NTclustered gi|1845957825|gb|MT522649.1| 1917129 g27437 i0 99.537 99.8888888888889 216 1 100 0 1 216 657 872 Gastropus stylifer isolate JH_001E10 small subunit ribosomal RNA gene, partial sequence blastn 21576 394 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Gastropodidae Gastropus Gastropus stylifer
5518549 5518549 PRJNA404067_P_NODE_36385_length_203_cov_1.225352_g35998_i0 PRJNA404067 36385 203 1.225352 2.48746456 Adineta vaga 104782 Rotifera other_Eukaryota 348 2.0100000000000006e-91   NTclustered gi|259129963|gb|GQ398061.1| 104782 g35998 i0 98.01 83.6995073891626 201 2 98 2 5 203 6768 6968 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16991 348 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;