RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA404067" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA404067 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1689551 1689551 PRJNA404067_P_NODE_33322_length_206_cov_2.675862_g32935_i0 PRJNA404067 33322 206 2.675862 5.51227572 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 300 5.82e-77   NTclustered gi|2874253789|emb|OY969773.1| 412054 g32935 i0 92.788 114.543689320388 208 13 100 2 1 206 421491 421698 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 23596 300 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14443392 14443392 PRJNA404067_P_NODE_16912_length_253_cov_0.953125_g16525_i0 PRJNA404067 16912 253 0.953125 2.41140625 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 318 2.05e-82   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g16525 i0 89.328 81.1185770750988 253 27 100 0 1 253 1103221 1102969 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 20523 318 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
15717446 15717446 PRJNA404067_P_NODE_35253_length_204_cov_1.405594_g34866_i0 PRJNA404067 35253 204 1.405594 2.86741176 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 87.9 4.88e-13   NTclustered gi|2107901501|gb|CP070815.1| 2026742 g34866 i0 96.226 7.77941176470588 53 2 26 0 151 203 4018572 4018520 MAG: Gemmatimonadetes bacterium isolate bin118 chromosome blastn 1587 87.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
25307374 25307374 PRJNA404067_P_NODE_18720_length_241_cov_1.894444_g18333_i0 PRJNA404067 18720 241 1.894444 4.56561004 Gemmatimonadaceae 219687 Bacteria Bacteria 171 5.74e-38   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g18333 i0 83.516 76.896265560166 182 30 76 0 51 232 748472 748653 Gemmatimonas phototrophica strain AP64, complete genome blastn 18532 172 0.994186046511628 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;