RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA404067" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA404067 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
414809 414809 PRJNA404067_P_NODE_42481_length_186_cov_2.624000_g42094_i0 PRJNA404067 42481 186 2.624 4.88064 Vannella septentrionalis 197531 Discosea other_Eukaryota 152 1.52e-32   NTclustered gi|300078499|gb|GU001161.1| 197531 g42094 i0 98.824 46.247311827957 85 1 94 0 50 134 2219 2135 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8602 152 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
2965150 2965150 PRJNA404067_P_NODE_13363_length_286_cov_1.786667_g12976_i0 PRJNA404067 13363 286 1.786667 5.10986762 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 503 6.069999999999998e-138   NTclustered gi|399764261|gb|JQ271772.1| 1105345 g12976 i0 98.264 8.57692307692308 288 3 100 1 1 286 299 12 Vexillifera bacillipedes strain 6HZM 18S ribosomal RNA gene, partial sequence blastn 2453 503 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
13168325 13168325 PRJNA404067_P_NODE_24791_length_223_cov_3.641975_g24404_i0 PRJNA404067 24791 223 3.641975 8.12160425 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 401 1.7099999999999992e-107   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g24404 i0 99.103 16.9551569506726 223 2 100 0 1 223 882 1104 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 3781 401 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes
18266100 18266100 PRJNA404067_P_NODE_19235_length_239_cov_4.157303_g18848_i0 PRJNA404067 19235 239 4.157303 9.93595417 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 412 8.549999999999998e-111   NTclustered gi|330902861|gb|JF298256.1| 1017091 g18848 i0 97.917 71.9707112970711 240 2 100 3 1 239 516 279 Cochliopodium larifeili clone 907 18S ribosomal RNA gene, partial sequence blastn 17201 412 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
20816507 20816507 PRJNA404067_P_NODE_41377_length_191_cov_2.176923_g40990_i0 PRJNA404067 41377 191 2.176923 4.15792293 Vexillifera bacillipedes 1105345 Discosea other_Eukaryota 300 5.31e-77   NTclustered gi|354720325|gb|HQ687484.1| 1105345 g40990 i0 95.312 26.4607329842932 192 3 100 4 1 191 220 406 Vexillifera bacillipedes strain TIL2 small subunit ribosomal RNA gene, partial sequence blastn 5054 300 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera bacillipedes

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;