RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA401346" and tax_phylum = "Pisuviricota"

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tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA401346 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
414123 414123 PRJNA401346_P_NODE_1_length_6428_cov_8.859746_g0_i0 PRJNA401346 1 6428 8.859746 569.50447288 Potyvirus sacchari 3240610 Viruses Viruses 11638 0   NTclustered gi|1173652586|gb|KU886553.1| 12224 g0 i0 99.347 99.1067205973864 6428 42 100 0 1 6428 9580 3153 Sugarcane mosaic virus isolate Yunan, complete genome blastn 637058 11638 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
414131 414131 PRJNA401346_P_NODE_2421_length_322_cov_2.172414_g2400_i0 PRJNA401346 2421 322 2.172414 6.99517308 Potyvirus sacchari 3240610 Viruses Viruses 595 1.1099999999999995e-165   NTclustered gi|447380403|gb|JX047426.1| 12224 g2400 i0 100 76.5217391304348 322 0 100 0 1 322 4869 4548 Sugarcane mosaic virus isolate YL8, complete genome blastn 24640 595 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
14443088 14443088 PRJNA401346_P_NODE_12_length_2556_cov_3.388778_g10_i0 PRJNA401346 12 2556 3.388778 86.61716568 Potyvirus sacchari 3240610 Viruses Viruses 4647 0   NTclustered gi|987898853|gb|KU171817.1| 12224 g10 i0 99.491 99.481220657277 2555 13 99 0 1 2555 637 3191 Sugarcane mosaic virus isolate CN:HB:15, complete genome blastn 254274 4647 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
14443132 14443132 PRJNA401346_P_NODE_3192_length_289_cov_2.421053_g3171_i0 PRJNA401346 3192 289 2.421053 6.99684317 Potyvirus sacchari 3240610 Viruses Viruses 518 2.19e-142   NTclustered gi|1782804217|gb|MN756484.1| 12224 g3171 i0 98.962 99.8304498269896 289 3 100 0 1 289 8433 8145 Sugarcane mosaic virus isolate SCMV Mara13-TZA, complete genome blastn 28851 518 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
18265781 18265781 PRJNA401346_P_NODE_115_length_1251_cov_7.282353_g106_i0 PRJNA401346 115 1251 7.282353 91.10223603 Potyvirus sacchari 3240610 Viruses Viruses 2139 0   NTclustered gi|447380327|gb|JX047388.1| 12224 g106 i0 98.753 95.8705035971223 1203 15 99 0 4 1206 9576 8374 Sugarcane mosaic virus isolate BD13, complete genome blastn 119934 2139 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
18265794 18265794 PRJNA401346_P_NODE_1575_length_385_cov_1.574074_g1554_i0 PRJNA401346 1575 385 1.574074 6.0601849 Potyvirus sacchari 3240610 Viruses Viruses 691 0   NTclustered gi|447380343|gb|JX047396.1| 12224 g1554 i0 99.474 98.8051948051948 380 2 99 0 6 385 3638 4017 Sugarcane mosaic virus isolate NX7271, complete genome blastn 38040 691 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
20207290 20207290 PRJNA401346_P_NODE_6756_length_208_cov_0.870748_g6735_i0 PRJNA401346 6756 208 0.870748 1.81115584 Polerovirus 119164 Viruses Viruses 368 1.59e-97   NTclustered gi|1023464444|ref|NC_029990.1| 1833824 g6735 i0 98.558 85.5673076923077 208 3 100 0 1 208 4907 4700 Maize yellow dwarf virus-RMV2, complete genome blastn 17798 368 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Sobelivirales Solemoviridae Polerovirus Polerovirus MAYMV
20815973 20815973 PRJNA401346_P_NODE_757_length_529_cov_3.440171_g736_i0 PRJNA401346 757 529 3.440171 18.19850459 Potyvirus sacchari 3240610 Viruses Viruses 961 0   NTclustered gi|987898853|gb|KU171817.1| 12224 g736 i0 99.433 84.937618147448 529 3 100 0 1 529 549 21 Sugarcane mosaic virus isolate CN:HB:15, complete genome blastn 44932 961 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari
22090639 22090639 PRJNA401346_P_NODE_2478_length_319_cov_2.046512_g2457_i0 PRJNA401346 2478 319 2.046512 6.52837328 Potyvirus sacchari 3240610 Viruses Viruses 573 5.159999999999998e-159   NTclustered gi|1368163998|gb|MF467399.1| 12224 g2457 i0 99.06 89 319 3 100 0 1 319 7321 7003 Sugarcane mosaic virus isolate NA41-Tz, complete genome blastn 28391 573 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Patatavirales Potyviridae Potyvirus Potyvirus sacchari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;