RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA401346" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA401346 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4241357 4241357 PRJNA401346_P_NODE_5744_length_220_cov_1.207547_g5723_i0 PRJNA401346 5744 220 1.207547 2.6566034 Acrasis rosea 43695 Heterolobosea other_Eukaryota 254 4.98e-63   NTclustered gi|12083876|gb|AF190771.1|AF190771 43695 g5723 i0 92.655 67.3181818181818 177 12 80 1 45 220 433 257 Acrasis rosea elongation factor 1 alpha (tef1) gene, partial cds blastn 14810 254 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis rosea
11893014 11893014 PRJNA401346_P_NODE_3390_length_283_cov_0.797297_g3369_i0 PRJNA401346 3390 283 0.797297 2.25635051 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 451 2.1999999999999995e-122   NTclustered gi|290985679|ref|XM_002675507.1| 5762 g3369 i0 95.423 1.00353356890459 284 12 100 1 1 283 1167 884 Naegleria gruberi methionyl aminopeptidase (NAEGRDRAFT_58459), mRNA blastn 284 451 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
20815944 20815944 PRJNA401346_P_NODE_6537_length_208_cov_0.870748_g6516_i0 PRJNA401346 6537 208 0.870748 1.81115584 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 353 4.46e-93   NTclustered gi|290988973|ref|XM_002677099.1| 5762 g6516 i0 97.573 19.3317307692308 206 5 99 0 1 206 208 413 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_55776), mRNA blastn 4021 353 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
23366435 23366435 PRJNA401346_P_NODE_8499_length_202_cov_0.907801_g8478_i0 PRJNA401346 8499 202 0.907801 1.83375802 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 141 3.65e-29   NTclustered gi|2119426811|ref|XM_044701171.1| 5763 g8478 i0 80.319 6.45544554455446 188 35 93 2 3 189 391 205 Naegleria fowleri uncharacterized protein (FDP41_010830), partial mRNA blastn 1304 141 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
24640592 24640592 PRJNA401346_P_NODE_3520_length_278_cov_1.216590_g3499_i0 PRJNA401346 3520 278 1.21659 3.3821202 Percolomonas cosmopolitus 63605 Heterolobosea other_Eukaryota 370 6.219999999999999e-98   NTclustered gi|33089879|gb|AY283748.1| 63605 g3499 i0 92.337 99.2230215827338 261 18 94 2 19 278 1 260 Percolomonas cosmopolitus isolate Gym67_1 actin gene, partial cds blastn 27584 370 1 Eukaryota Discoba   Heterolobosea     Percolomonadidae Percolomonas Percolomonas cosmopolitus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;