RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA401346" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA401346 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3631922 3631922 PRJNA401346_P_NODE_3783_length_270_cov_4.799043_g3762_i0 PRJNA401346 3783 270 4.799043 12.9574161 Fungi 4751 Fungi Fungi 121 6.689999999999999e-23   NTclustered gi|2432138713|ref|XM_053107478.1| 110093 g3762 i0 84.252 9.62962962962963 127 16 46 3 6 130 24 148 Polychytrium aggregatum large subunit ribosomal protein 29 (BJ171DRAFT_421272), partial mRNA blastn 2600 122 0.991803278688525 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
5517907 5517907 PRJNA401346_P_NODE_1425_length_400_cov_1.238938_g1404_i0 PRJNA401346 1425 400 1.238938 4.955752 Polychytrium aggregatum 110093 Fungi Fungi 187 1.0099999999999999e-42   NTclustered gi|2432157378|ref|XM_053107751.1| 110093 g1404 i0 76.438 3.6425 365 75 90 9 7 364 547 187 Polychytrium aggregatum ribosomal protein L6, alpha-beta domain-containing protein (BJ171DRAFT_426015), partial mRNA blastn 1457 187 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;