RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA401346" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA401346 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1688993 1688993 PRJNA401346_P_NODE_2042_length_347_cov_1.255245_g2021_i0 PRJNA401346 2042 347 1.255245 4.35570015 Micromonas commoda 296587 Plants Plants 239 2.35e-58   NTclustered gi|255079947|ref|XM_002503508.1| 296587 g2021 i0 82.246 2.91066282420749 276 49 80 0 70 345 199 474 Micromonas commoda mitochondrial carrier family mRNA blastn 1010 239 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda
11892973 11892973 PRJNA401346_P_NODE_1730_length_371_cov_1.003226_g1709_i0 PRJNA401346 1730 371 1.003226 3.72196846 Micromonas commoda 296587 Plants Plants 189 2.5799999999999998e-43   NTclustered gi|255081970|ref|XM_002508158.1| 296587 g1709 i0 76.738 2.01617250673854 374 65 98 18 9 371 425 63 Micromonas commoda predicted protein mRNA blastn 748 189 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas commoda

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;