RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA401346" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA401346 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10618159 10618159 PRJNA401346_P_NODE_4409_length_254_cov_0.839378_g4388_i0 PRJNA401346 4409 254 0.839378 2.13202012 Heterostelium album 2086695 Evosea other_Eukaryota 99 2.92e-16   NTclustered gi|1160562824|ref|XM_020579627.1| 670386 g4388 i0 85.263 0.374015748031496 95 14 37 0 151 245 274 368 Polysphondylium pallidum PN500 nucleoside diphosphate kinase (ndkC-2), partial mRNA blastn 95 99 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
14443310 14443310 PRJNA401346_P_NODE_8912_length_197_cov_2.764706_g8891_i0 PRJNA401346 8912 197 2.764706 5.44647082 Acytostelium subglobosum 361139 Evosea other_Eukaryota 71.3 4.71e-8   NTclustered gi|831788452|ref|XM_012903297.1| 1410327 g8891 i0 88.136 0.299492385786802 59 7 30 0 139 197 1907 1849 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 59 71.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
18265808 18265808 PRJNA401346_P_NODE_2095_length_343_cov_1.606383_g2074_i0 PRJNA401346 2095 343 1.606383 5.50989369 Heterostelium album 2086695 Evosea other_Eukaryota 348 3.690000000000001e-91   NTclustered gi|1160564476|ref|XM_020583030.1| 670386 g2074 i0 86.435 85.4518950437318 317 43 92 0 25 341 1185 869 Polysphondylium pallidum PN500 hypothetical protein partial mRNA blastn 29310 348 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;