RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA400171" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA400171 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1688533 1688533 PRJNA400171_S_NODE_2822_length_240_cov_3.331754_g2732_i0 PRJNA400171 2822 240 3.331754 7.9962096 Malassezia restricta 76775 Fungi Fungi 438 1.4199999999999995e-118   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g2732 i0 99.583 98.8083333333333 240 1 100 0 1 240 3217 2978 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 23714 438 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
3631796 3631796 PRJNA400171_S_NODE_6743_length_173_cov_8.701389_g6653_i0 PRJNA400171 6743 173 8.701389 15.05340297 Malassezia 55193 Fungi Fungi 315 1.68e-81   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g6653 i0 99.422 104.023121387283 173 1 100 0 1 173 2418 2590 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 17996 315 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
4240962 4240962 PRJNA400171_S_NODE_7164_length_169_cov_2.771429_g7074_i0 PRJNA400171 7164 169 2.771429 4.68371501 Pleurotus ostreatus 5322 Fungi Fungi 313 5.859999999999999e-81   NTclustered gi|148358037|gb|DQ071722.2| 5322 g7074 i0 100 101.92899408284 169 0 100 0 1 169 1615 1783 Pleurotus ostreatus voucher TUB 011571 28S large subunit ribosomal RNA gene, partial sequence blastn 17226 313 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Pleurotaceae Pleurotus Pleurotus ostreatus
10009053 10009053 PRJNA400171_S_NODE_2828_length_240_cov_3.066351_g2738_i0 PRJNA400171 2828 240 3.066351 7.3592424 Ceratobasidiaceae 5250 Fungi Fungi 444 3.05e-120   NTclustered gi|1473260339|gb|MH873283.1| 107832 g2738 i0 100 99.9916666666667 240 0 100 0 1 240 414 175 Thanatephorus cucumeris culture CBS:700.82 strain CBS 700.82 large subunit ribosomal RNA gene, partial sequence blastn 23998 444 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Cantharellales Ceratobasidiaceae Thanatephorus Thanatephorus cucumeris
11284279 11284279 PRJNA400171_S_NODE_1729_length_284_cov_6.984314_g1639_i0 PRJNA400171 1729 284 6.984314 19.83545176 Malassezia 55193 Fungi Fungi 508 1.29e-139   NTclustered gi|1042812810|gb|KT351778.1| 76775 g1639 i0 98.944 99.9683098591549 284 3 100 0 1 284 23 306 Malassezia restricta isolate contig100_19323 26S ribosomal RNA gene, partial sequence blastn 28391 508 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
13167624 13167624 PRJNA400171_S_NODE_6571_length_175_cov_3.623288_g6481_i0 PRJNA400171 6571 175 3.623288 6.340754 Malassezia restricta 76775 Fungi Fungi 324 2.83e-84   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g6481 i0 100 30.2 175 0 100 0 1 175 1868 1694 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 5285 324 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;