RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 4 ✖

bioproject 1

  • PRJNA399711 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25563276 25563276 PRJNA399711_S_NODE_36937_length_222_cov_2.275676_g36795_i0 PRJNA399711 36937 222 2.275676 5.05200072 Methanosphaera sp. ISO3-F5 1452353 Archaea Archaea 52.8 0.02   NTclustered gi|2695672541|gb|CP118754.2| 1452353 g36795 i0 100 0.126126126126126 28 0 13 0 174 201 141713 141740 Methanosphaera sp. ISO3-F5 plasmid pNP174, complete sequence blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. ISO3-F5
26106159 26106159 PRJNA399711_S_NODE_100133_length_155_cov_1.720339_g99991_i0 PRJNA399711 100133 155 1.720339 2.66652545 Vulcanisaeta moutnovskia 768-28 985053 Archaea Archaea 52.8 0.013   NTclustered gi|323706731|gb|CP002529.1| 985053 g99991 i0 100 0.180645161290323 28 0 18 0 30 57 336100 336127 Vulcanisaeta moutnovskia 768-28, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta moutnovskia
26242509 26242509 PRJNA399711_S_NODE_107126_length_151_cov_2.877193_g106984_i0 PRJNA399711 107126 151 2.877193 4.34456143 Halobaculum limi 3031916 Archaea Archaea 52.8 0.012   NTclustered gi|2471356524|gb|CP120468.1| 3031916 g106984 i0 100 0.185430463576159 28 0 19 0 35 62 499995 499968 Halobaculum limi strain YSMS11 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobaculum Halobaculum limi
26518085 26518085 PRJNA399711_S_NODE_95920_length_157_cov_3.991667_g95778_i0 PRJNA399711 95920 157 3.991667 6.26691719 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 244 1.99e-60   NTclustered gi|937513727|gb|CP012850.1| 1353260 g95778 i0 94.872 0.993630573248408 156 8 99 0 1 156 2030528 2030373 Candidatus Nitrosocosmicus oleophilus strain MY3, complete genome blastn 156 244 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;