RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA399711 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25836697 25836697 PRJNA399711_S_NODE_68979_length_177_cov_3.114286_g68837_i0 PRJNA399711 68979 177 3.114286 5.51228622 Necator americanus 51031 Nematoda Nematoda 122 1.1199999999999999e-23   NTclustered gi|2707621710|ref|XM_013453918.2| 51031 g68837 i0 91.111 7.31073446327684 90 8 51 0 3 92 1042 1131 Necator americanus uncharacterized protein (RB195_025756), partial mRNA blastn 1294 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
25896636 25896636 PRJNA399711_S_NODE_39091_length_217_cov_12.738889_g38949_i0 PRJNA399711 39091 217 12.738889 27.64338913 Onchocercidae 6296 Nematoda Nematoda 65.8 2.46e-6   NTclustered gi|100913230|gb|DQ516388.1| 6279 g38949 i0 83.784 1.23963133640553 74 6 33 4 36 106 679 609 Brugia malayi acidic ribosomal protein 0 (rpa0) and translationally controlled tumor protein-like protein (tct1) genes, partial cds blastn 269 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;