RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399711 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25698010 25698010 PRJNA399711_S_NODE_106442_length_151_cov_6.640351_g106300_i0 PRJNA399711 106442 151 6.640351 10.02693001 Pendulispora rubella 2741070 Bacteria Bacteria 176 7.009999999999999e-40   NTclustered gi|2698045512|gb|CP089929.1| 2741070 g106300 i0 93.966 94.6026490066225 116 7 77 0 35 150 7289886 7290001 Pendulispora rubella strain MSr11368 chromosome, complete genome blastn 14285 176 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
25896692 25896692 PRJNA399711_S_NODE_49051_length_200_cov_6.141104_g48909_i0 PRJNA399711 49051 200 6.141104 12.282208 root 1 Root_unresolved Root_unresolved 52.8 0.017   NTclustered gi|1566495190|gb|CP012670.1| 56 g48909 i0 96.875 0.48 32 0 16 1 44 75 4511827 4511797 Sorangium cellulosum strain So ceGT47 chromosome, complete genome blastn 96 52.8 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;