RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA399711 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25896803 25896803 PRJNA399711_S_NODE_77787_length_169_cov_12.500000_g77645_i0 PRJNA399711 77787 169 12.5 21.125 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 302 1.27e-77   NTclustered gi|1802599797|gb|MT001206.1| 41631 g77645 i0 98.817 99.1538461538462 169 2 100 0 1 169 680 512 Colpoda sp. strain HFCC1227 small subunit ribosomal RNA gene, partial sequence blastn 16757 302 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25896829 25896829 PRJNA399711_S_NODE_83227_length_165_cov_10.695312_g83085_i0 PRJNA399711 83227 165 10.695312 17.6472648 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 303 3.45e-78   NTclustered gi|1802599796|gb|MT001205.1| 41631 g83085 i0 100 100.139393939394 164 0 99 0 1 164 129 292 Colpoda sp. strain HFCC864 small subunit ribosomal RNA gene, partial sequence blastn 16523 303 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25971300 25971300 PRJNA399711_S_NODE_27116_length_247_cov_9.128571_g26974_i0 PRJNA399711 27116 247 9.128571 22.54757037 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 401 1.9199999999999992e-107   NTclustered gi|2651357791|gb|PP174306.1| 41631 g26974 i0 96.694 97.7044534412955 242 7 98 1 6 247 3693 3453 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24133 401 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25971930 25971930 PRJNA399711_S_NODE_40812_length_214_cov_4.774011_g40670_i0 PRJNA399711 40812 214 4.774011 10.21638354 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 209 1.06e-49   NTclustered gi|11466252|ref|NC_000862.1| 5908 g40670 i0 85.507 73.1168224299065 207 23 95 6 11 213 1149 946 Tetrahymena pyriformis mitochondrion, complete genome blastn 15647 209 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;